Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2321
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   2.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.1  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   8.0  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = -2

Query: 322 VNNNVFYKVVLSTLFYSIINSFRRARDVNNILSNF----FTPWVTLLE 191
           ++NN  YK     L+Y+IIN  +    V     NF      PW+++ E
Sbjct: 323 IHNNNNYKNYNKKLYYNIINIEQIPVPVPVYCGNFPPRPMGPWISIQE 370


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 216  LHLGLHYWSFSGDP*FYFIFKY 151
            L L LH W  +G P  YF  +Y
Sbjct: 1515 LVLRLHVWPDNGCPILYFTIQY 1536


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 216  LHLGLHYWSFSGDP*FYFIFKY 151
            L L LH W  +G P  YF  +Y
Sbjct: 1511 LVLRLHVWPDNGCPILYFTIQY 1532


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 635 KLRWRPSDVFARGPL*MNFRHIW 567
           KL+W P D      L +   HIW
Sbjct: 81  KLKWNPDDYGGVDTLHVPSEHIW 103


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 237 IIF*VIFLHLGLHYWSF 187
           I+F V F+   + YWSF
Sbjct: 450 IVFPVAFIIFNILYWSF 466


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 83  VSEPIQNKQTNKSFLFIILLL 21
           V +P+ N  T   FLF++ L+
Sbjct: 55  VHDPVTNSDTYIGFLFVLGLI 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,210
Number of Sequences: 438
Number of extensions: 4511
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)