Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2319
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    26   4.4  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   7.6  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   7.6  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   7.6  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    25   7.6  

>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -2

Query: 425 LGSVSGGRRREAPRHRSPINSIYTRARDE---TEPALRHSCPDDTRPRHH*PLSIITKEN 255
           LG   G ++ E+ R + P  S    +       EP +RHS     RP+ H   S +T+++
Sbjct: 20  LGEEDGRQKGESSRKKRPPLSRKNPSNVSFWSNEPIIRHSSVKTDRPQFHRADSTVTEQS 79


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 168 CREA-VMRFGLKGGAAVVTIWVAHLCC 91
           CR A  +R G+K G  ++ I V  +CC
Sbjct: 7   CRSANTLRKGIKNGKLILKIIVNDVCC 33


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -2

Query: 392 APRHRSPINSIYTRARDETEPALRHSCPDDTRPRHH*PL 276
           APR R P  ++ T A  E  P  +   P  TR     PL
Sbjct: 24  APRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLPRKPL 62


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 377 SPINSIYTRARDETEPALRHSCPDDTRPRHH*PLSIITKEN 255
           SP+++      D ++PAL  S      P+H   LS   KEN
Sbjct: 391 SPLSTPLKAQFDPSKPALNRSIDHQKTPQHKRYLSTEFKEN 431


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +2

Query: 194 YPRGLTRGPTTSKINHINTIRFPL**Y*AASGVV 295
           YP  LT   TT K  H  +IRF    Y  ASG+V
Sbjct: 14  YPEALT---TTLKHGHATSIRFSTNGYHLASGLV 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,547
Number of Sequences: 5004
Number of extensions: 45290
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)