Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2319
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0480 + 34218403-34218405,34219071-34219127,34220047-342203... 32 0.27
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874... 30 1.5
09_04_0504 + 18180321-18181013 29 2.5
08_02_1170 + 24876197-24877070,24877563-24877606,24877805-248779... 29 2.5
06_01_0465 - 3304417-3306834 29 2.5
02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393 29 2.5
07_03_0356 - 17142019-17142899,17145251-17145290,17145381-171455... 29 3.4
02_05_0073 - 25602268-25603182,25603273-25604190 29 3.4
02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237 29 3.4
02_05_0379 - 28454026-28454325,28454416-28454631,28454729-284549... 28 4.4
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 27 7.7
01_06_1522 - 37962431-37963060,37963216-37963542 27 7.7
>03_06_0480 +
34218403-34218405,34219071-34219127,34220047-34220312,
34220402-34220552
Length = 158
Score = 32.3 bits (70), Expect = 0.27
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = -3
Query: 547 MFVVPGTPPKGQEEDVVLLARST-LLKKSLVGVQKYIQATDLSEASQEAVEEKLR 386
+F + +P + +L A S KK L G+Q +QATD E S +A++++++
Sbjct: 104 IFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLEVQATDAGEISLDALKDRVK 158
>07_03_0561 +
19485218-19485242,19485323-19486467,19487354-19487476,
19487553-19487626,19487886-19487946,19488285-19488370,
19488795-19488864,19489026-19489122,19489342-19489481,
19490225-19490308,19490313-19490346,19491833-19491951
Length = 685
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 125 AAPPFKPKRITASRQK*AGGGGTYP 199
A PP +PKR+ R+K AGG G P
Sbjct: 82 APPPPQPKRLQGGRKKGAGGHGKLP 106
>09_04_0504 + 18180321-18181013
Length = 230
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 518 GSRRRCCTSSSFDASEKVPCRSSEVHPSDRPLGSVSGGRRREAPRHRSPI 369
G R+ TSSS A+ SS P+ P S + RRR +P P+
Sbjct: 89 GGSRKSSTSSSSAAAAAASSSSSPSSPAKSPKRSKNSKRRRVSPPPPQPV 138
>08_02_1170 +
24876197-24877070,24877563-24877606,24877805-24877900,
24877999-24878544
Length = 519
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -1
Query: 165 REAVMRFGLKGGAAVVTIWVAHLCCRCL*LPVTT 64
R +++ G+ G A+V++W+ + C + +PV T
Sbjct: 140 RPSLLLLGVTGTTALVSMWIHNTACTVMMMPVAT 173
>06_01_0465 - 3304417-3306834
Length = 805
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 407 LLRRFREVGRLDVLLNSDKGLFQKRRTS*KYNIFF-LTLGRCSGHHE 544
L+ F E G LD +L+ + GLF + S +YNI + G HHE
Sbjct: 590 LVSEFAENGSLDRVLSDNLGLFPVLQWSQRYNIALGVAKGLAYLHHE 636
>02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393
Length = 158
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 547 MFVVPGTPPKGQEEDVVLLARST-LLKKSLVGVQKYIQATDLSEASQEAVEEK 392
+F + P + +L A S K+ L G+Q +QATD SE S + V+ +
Sbjct: 104 IFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKSR 156
>07_03_0356 -
17142019-17142899,17145251-17145290,17145381-17145512,
17145762-17145815,17145913-17145993,17146860-17146955,
17147439-17147611,17147750-17147823,17148515-17148622,
17148693-17148868,17149305-17149352,17150665-17150775,
17152172-17152226,17153434-17153534,17154176-17154290,
17155505-17155698
Length = 812
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 476 SEKVPCRSSEVHPSDRPLGSVSGGRRREAPRHRSPINSI 360
+E R E P R G+ +GGRRR+A +R + I
Sbjct: 5 AESCGSRGGESPPPPRTRGASAGGRRRKAEAYREVLRRI 43
>02_05_0073 - 25602268-25603182,25603273-25604190
Length = 610
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -2
Query: 518 GSRRRCCTSSSFDASEKVPCRSSEVHPSDRPLGSVSGGRRREAPRHRSPINSIYTRARDE 339
GSR R S AS R+ V P+ P GS GG E + P + AR++
Sbjct: 171 GSRERSSGGGSRRASRSPGRRAEGVSPAPAPAGSGGGGGGGERVVRQQPGKMVSVPAREK 230
>02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237
Length = 572
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = +3
Query: 330 GFGFVASSCVNAVYWRSVARSFSSTAS*DASERSVAWMYF*TPTRDFFRSVERARSTTSS 509
GFG V VNAV+W S+AR SS +V+++ + R F S ++
Sbjct: 257 GFGIVFGG-VNAVFWSSLARVSSSWVISPLMGAAVSFIVY-KGIRRFVYSAPNPGQAAAA 314
Query: 510 S*PLGGVPGTTNI 548
+ P+ G T I
Sbjct: 315 AAPIAVFTGVTAI 327
>02_05_0379 -
28454026-28454325,28454416-28454631,28454729-28454935,
28455024-28455074
Length = 257
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -2
Query: 542 RGARNTAQGSRRRCCTSSSFDASEKVPCRSSEVHPSDRPLGSV--SGGRRREAPRHRSPI 369
R A A+ CTS+S +S+K S + P + +G +RR+ HRSP
Sbjct: 191 RAALKDARYESEDSCTSTSGGSSDKSSVVQSFTPLTPPPTSASYRTGNKRRKGVPHRSPF 250
Query: 368 NSI 360
S+
Sbjct: 251 GSL 253
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = -2
Query: 479 ASEKVPCRSSEVHPSDRPLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDT 300
A+E V RS HPS R G + R RH S + Y R + +L D T
Sbjct: 645 AAEGVRHRSRTPHPSGRQRAHGDGRQGRSQTRHSSRCSCRYRSRRTRSPSSLTPRDQDGT 704
>01_06_1522 - 37962431-37963060,37963216-37963542
Length = 318
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 30 MVGRAHSPPGVKWLLEAID 86
+VG+ H PPG +WL E +D
Sbjct: 44 LVGQLHLPPGGRWLDEYMD 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,899,184
Number of Sequences: 37544
Number of extensions: 383340
Number of successful extensions: 1291
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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