Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2319
         (561 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    25   1.3  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    25   1.3  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    25   1.7  
CR954256-10|CAJ14151.1|  548|Anopheles gambiae putative alkaline...    25   2.2  
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    24   3.0  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    23   5.2  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    23   6.8  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
 Frame = +2

Query: 32  GWTSSQPTRC*VVTGSYRH--LQHKCATHIVTTAAPPFKPKR----ITASRQK*AGGGGT 193
           G  + Q  RC  +    +H   Q     H+  TA   + P+R    I   R   A GGG+
Sbjct: 132 GCNAGQTNRCSSLKDLIKHGETQAVIEIHLENTAFNAYDPERYGGRIICERTLNASGGGS 191

Query: 194 YPRGLTRGPTTS 229
           Y      G T S
Sbjct: 192 YKLKNEHGQTVS 203


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +3

Query: 117  LQRLPRPSNRNALLL---HGRNRQGAVVPTRADS 209
            LQRL R   R   L    HGRNR+    P+ AD+
Sbjct: 1143 LQRLYRQRAREGTLPTVPHGRNRRSRSAPSEADT 1176


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 386  RHRSPINSIYTRARDETEPALRHS 315
            RHRS + +  TR + +TE A+RH+
Sbjct: 1794 RHRSLVTATKTRKKQQTE-AIRHA 1816


>CR954256-10|CAJ14151.1|  548|Anopheles gambiae putative alkaline
           phosphatase protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 416 VSGGRRREAPRHRSPINSIYTRARDETEPALRH 318
           + GGRR   P H + I+ I  R R + E  ++H
Sbjct: 267 MGGGRREFLPTHETDIDGIRGR-RTDGEDLIKH 298


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -3

Query: 454 VQKYIQATDLSEASQEAVEEKLR 386
           ++KY++  DLSE  +E ++ +L+
Sbjct: 896 IEKYLKPLDLSEKQKEEMKSQLK 918


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = -3

Query: 535 PGTPPKGQEEDVVLLARSTLLKKSLVGVQKYIQATD--LSEASQEAVEEKLRAT 380
           PG    G  +D+VLLA  T    + V  ++ + A D  L E   E    K   T
Sbjct: 665 PGAELIGYADDLVLLAPGTTPAAAAVVAEEAVSAVDRWLREHHLELAHAKTEMT 718


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 539 GARNTAQGSRRRCCTSSSFDASEKVPCRSSEVHPSDRP 426
           GAR    G    C TS++ D      C+   +H +D P
Sbjct: 279 GARCKCNGHASECTTSTALDGQRTRVCKC--MHFTDGP 314


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 603,610
Number of Sequences: 2352
Number of extensions: 12772
Number of successful extensions: 29
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52563375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)