Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2319
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132858-15|CAB60482.3|  300|Caenorhabditis elegans Hypothetical...    32   0.32 
AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U80450-11|AAM15595.1|  664|Caenorhabditis elegans Temporarily as...    27   7.0  
U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily ass...    27   7.0  
U80450-8|AAK77616.1|  949|Caenorhabditis elegans Temporarily ass...    27   7.0  
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n...    27   7.0  

>AL132858-15|CAB60482.3|  300|Caenorhabditis elegans Hypothetical
           protein Y113G7A.10 protein.
          Length = 300

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 512 RRRCCTSSSFDASEKVPCRSSEVHPSDRPLGSVSGGRRREAPRH-RSPINSIYTRARDET 336
           RR+ C  S F+   K+P  S ++ P+   L S SG    E   H  S +    T+  D T
Sbjct: 185 RRKTCEESEFEMRNKIP-SSLQLQPTQSSLKSRSGKNLSEMSLHPGSTLKVEKTQEDDVT 243

Query: 335 EP 330
           EP
Sbjct: 244 EP 245


>AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.6 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 305 RQGRSVGERVRFRRELVCKCC 367
           R+GR  G+ ++FR E VC+CC
Sbjct: 196 RKGR--GKNIKFRTEKVCRCC 214


>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
           protein C01C7.1 protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 425 LGSVSGGRRREAPRHRSPINSIYTRARDETEPA 327
           L ++S  R+   P  R P+ ++Y R +D   PA
Sbjct: 688 LTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720


>U80450-11|AAM15595.1|  664|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform d protein.
          Length = 664

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 376 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 468
           +RWRG    +PP   PR  S    + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465


>U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform a protein.
          Length = 1112

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 376 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 468
           +RWRG    +PP   PR  S    + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465


>U80450-8|AAK77616.1|  949|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform c protein.
          Length = 949

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 376 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 468
           +RWRG    +PP   PR  S    + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465


>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
           non-receptor tyrosinekinase protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 425 LGSVSGGRRREAPRHRSPINSIYTRARDETEPA 327
           L ++S  R+   P  R P+ ++Y R +D   PA
Sbjct: 688 LTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,233,475
Number of Sequences: 27780
Number of extensions: 277214
Number of successful extensions: 813
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)