Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2319
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    29   0.042
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.9  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   6.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   6.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   6.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 28.7 bits (61), Expect = 0.042
 Identities = 23/79 (29%), Positives = 35/79 (44%)
 Frame = -3

Query: 532 GTPPKGQEEDVVLLARSTLLKKSLVGVQKYIQATDLSEASQEAVEEKLRATDRQ*TAFTH 353
           GTPP+    +V +  +S L KK  V   + + ATD  E + + V           T    
Sbjct: 96  GTPPEAVSYNVAVPTKSILEKKPDVTTVELVDATDPGEHNGDTV-----------TDVEA 144

Query: 352 ELATKPNPLSDTPALTTRG 296
            LA++ NPL D+ +    G
Sbjct: 145 GLASRTNPLDDSISQANEG 163


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -3

Query: 532 GTPPKGQEEDVVLLARSTLLKKSLVGVQKYIQATD--LSEASQEAVEEKL 389
           G    GQ  +  LLA +  +K+ +VGV K +  TD   SEA  E +++++
Sbjct: 126 GISKNGQTREHALLAFTLGVKQLIVGVNK-MDMTDPPYSEARFEEIKKEV 174


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 291 SWPRVVRAGVSESGFGFVASSCVNAVYWRSV 383
           +W      GV+  G G VAS   +A  W+S+
Sbjct: 907 TWSNSQVQGVAVPGSGIVASGQQHAGGWQSI 937


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = -3

Query: 403 VEEKLRATDRQ*TAFTHELATKPNPLSDTPALTTRGHDTTSRLVLLQRKTN-SINMIDFT 227
           + +K++ T          L  +   +   P +T  GH    +  LL    N SI   +F 
Sbjct: 117 ISKKIKKTMENKDITKRPLPNESQLIKRHPIVTIMGHVDHGKTTLLDALRNTSIAKSEF- 175

Query: 226 GGRTSCESA 200
           GG T C  A
Sbjct: 176 GGITQCIGA 184


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 532 GTPPKGQEEDVVLLARSTLLKKSLVGVQK 446
           G    GQ  +  LLA +  +K+ +VGV K
Sbjct: 53  GISKNGQTREHALLAFTLGVKQLIVGVNK 81


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 532 GTPPKGQEEDVVLLARSTLLKKSLVGVQK 446
           G    GQ  +  LLA +  +K+ +VGV K
Sbjct: 69  GISKNGQTREHALLAFTLGVKQLIVGVNK 97


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 532 GTPPKGQEEDVVLLARSTLLKKSLVGVQK 446
           G    GQ  +  LLA +  +K+ +VGV K
Sbjct: 126 GISKNGQTREHALLAFTLGVKQLIVGVNK 154


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 175 GRGRWYLPA 201
           G G+WYLP+
Sbjct: 236 GDGKWYLPS 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,062
Number of Sequences: 438
Number of extensions: 3655
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)