Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2316
         (534 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   0.97 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   0.97 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   3.0  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.8  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   9.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 0.97
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 142  KLQRSTPRSKPLISPKRRPTKPS 210
            K +   P  KP  S  ++PTKPS
Sbjct: 1151 KCEEKKPGHKPSTSSWQKPTKPS 1173


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 0.97
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 160 PRSKPLISPKRRPTKPSQSMNKTQKITTSKP 252
           P    +I+P+ + T PS +   T    ++KP
Sbjct: 411 PMQSQIINPQPQITSPSNTNTSTSSTNSNKP 441


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -1

Query: 324 LAISYPQLPKH-HRQPVP 274
           ++I+YPQ P+H +  P P
Sbjct: 1   MSITYPQYPQHPYAAPAP 18


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 160 PRSKPLISPK 189
           P S+PL+SPK
Sbjct: 109 PNSEPLVSPK 118


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 485 RDPTTGRRSQDRR 523
           R P TGR  Q RR
Sbjct: 217 RQPKTGREDQTRR 229


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,790
Number of Sequences: 336
Number of extensions: 2454
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)