Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2316
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   3.1  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   5.4  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    25   7.1  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   9.4  

>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 154 STPRSKPLISPKRRPTKPSQSMNKTQKITTSK 249
           +T  SKP++   R   KP+Q   K +K TTSK
Sbjct: 138 TTSDSKPVVHQTRATRKPAQP--KAEKSTTSK 167


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 139 FKLQRSTPRSKPLISPKRRPTKPSQSMNKTQKITTS 246
           F  Q + P + P +S  + PT+  Q +  T   TTS
Sbjct: 94  FSNQATIPSNSPAVSNMQPPTQGGQPLYPTNFFTTS 129


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 193 RPTKPSQSMNKTQKITTSK 249
           RP+KP+ +++KT  I +SK
Sbjct: 205 RPSKPANTLSKTASIQSSK 223


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 17  DCFRLTGLRCSRTFPSGAIPSRGVPRCGHPSCCPHSI 127
           +C RL  L+C R +P      RG+     P+ CP+ I
Sbjct: 24  ECHRLK-LKCDRVWPCENCKKRGI-----PNLCPNGI 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,009
Number of Sequences: 5004
Number of extensions: 37428
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)