Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2316
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0083 + 40970890-40971015,40971886-40971994,40972679-409727... 30 1.0
01_01_0602 - 4484972-4485450,4485949-4485997,4486108-4486237,448... 30 1.0
04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632... 29 1.8
01_06_0656 - 30926858-30927040,30927141-30927281,30927373-309274... 28 4.1
11_03_0132 - 10505910-10505996,10507419-10507499,10509582-105105... 28 5.4
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 28 5.4
10_08_0666 - 19691985-19692216,19692327-19692404,19692508-196928... 27 7.2
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 27 7.2
04_04_0933 + 29495656-29496972,29497244-29497819,29499414-294996... 27 7.2
03_05_0612 + 26117306-26118045,26118151-26118680,26119247-261192... 27 7.2
01_05_0110 + 18225431-18226992,18227158-18228132,18228343-182284... 27 7.2
01_01_0994 - 7861310-7862119,7862378-7862498,7862718-7862901,786... 27 7.2
06_03_0716 - 23831590-23832159 27 9.5
06_01_0450 + 3185342-3185645,3185761-3185837,3185948-3186028,318... 27 9.5
04_01_0308 + 4188726-4190351 27 9.5
03_03_0110 - 14523712-14525183,14525482-14525749 27 9.5
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023... 27 9.5
>01_07_0083 +
40970890-40971015,40971886-40971994,40972679-40972790,
40972944-40973100,40973609-40973761,40974143-40974292,
40974803-40974999,40975446-40975473
Length = 343
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 419 RCSSHGALS*LYGLTSHCTV*LRFSCFESVQGLPFLI-LNCPNTIDSLFLS 270
+CSS + +Y T HC+ CF +Q P+LI + CP D L LS
Sbjct: 84 KCSSPINVYAIYSYTIHCSTQAENICFWFIQNSPYLICVICPE--DHLHLS 132
>01_01_0602 -
4484972-4485450,4485949-4485997,4486108-4486237,
4486636-4486778,4486819-4486877,4487167-4487200,
4487489-4487629,4487719-4487907,4488027-4488122,
4488163-4488225,4488588-4489097
Length = 630
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 151 RSTPRSKPLISPKRRPT---KPSQSMNKTQKITTSKP 252
RS PRSK S K +P KPS+S + + K+ S+P
Sbjct: 560 RSQPRSKSTSSGKAKPVRSAKPSKSSSPSPKVAKSRP 596
>04_03_0278 -
13761999-13762462,13762628-13762727,13763065-13763289,
13763347-13763415,13763605-13764432,13764706-13764779,
13818821-13818905
Length = 614
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 133 ETFKLQRSTPRSKPLISPKRRPTKPSQ-SMNKTQKIT 240
ETF+L P S+P I PK P+ P +N Q+IT
Sbjct: 254 ETFELPILEPPSQPPIKPKSCPSSPQDVVLNNFQEIT 290
>01_06_0656 -
30926858-30927040,30927141-30927281,30927373-30927489,
30927696-30927784,30927870-30928010,30928084-30928171,
30928280-30928342,30928544-30928699,30928778-30928870,
30929095-30929176,30929426-30929493,30929575-30930633
Length = 759
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 3 KMRFLIVSALLACVAAAPSHLVPFPAVAYHAV 98
+ RF+ A+ + A+ HL P PA YHA+
Sbjct: 35 RRRFVAFLAISVALVASYHHLAPAPASRYHAL 66
>11_03_0132 -
10505910-10505996,10507419-10507499,10509582-10510528,
10510645-10510742,10511273-10511442,10511551-10511832,
10514544-10514936
Length = 685
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 180 DQRL*PGRRSLQLEC-LQVIEWGQQLGWPQRGTPRLGMAP 64
D RL P RR+ L L E QLG G PRLG+ P
Sbjct: 42 DARLPPARRAADLVSRLTAAEKVAQLGDEAGGVPRLGVPP 81
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/76 (26%), Positives = 29/76 (38%)
Frame = +1
Query: 22 FPPYWPALQPHLPIWCHSQPWRTTLWPSQLLSPLYHLETFKLQRSTPRSKPLISPKRRPT 201
+ P PA P P + + P + PS S + + + S+P SP PT
Sbjct: 1780 YSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSSPNYYSSTSPTYSPT 1839
Query: 202 KPSQSMNKTQKITTSK 249
PS S TS+
Sbjct: 1840 SPSYSQPSPSYSPTSR 1855
>10_08_0666 -
19691985-19692216,19692327-19692404,19692508-19692837,
19692913-19693158,19693224-19693483,19694469-19695023
Length = 566
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 21 VSALLACVAAAPSHLVPFPAVAY 89
V A+LA APS +PFPA A+
Sbjct: 225 VPAVLAAAGGAPSRRLPFPAGAF 247
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +1
Query: 37 PALQPHLPIWCHSQP-WRTTLWPSQLLSPLY 126
P L +W S+P WRTT+W L S Y
Sbjct: 2675 PETSLQLVMWNGSRPYWRTTVWTGYLTSGQY 2705
>04_04_0933 +
29495656-29496972,29497244-29497819,29499414-29499650,
29499736-29500048,29500191-29500300
Length = 850
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Frame = +1
Query: 100 PSQLLSPLYHLETFKLQRSTPRSKPLISPK--------RRPTKPSQSMN 222
PS LL L + F+ +R P S P +P+ RRP++P++S +
Sbjct: 5 PSSLLRDLLAADGFRNRRKPPDSNPPAAPRTTSMPLQHRRPSRPARSQS 53
>03_05_0612 +
26117306-26118045,26118151-26118680,26119247-26119278,
26119910-26121175
Length = 855
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 130 GDRVGTTAGMATAWYATAGNGTRWEGA 50
G GT A M + W + NG W GA
Sbjct: 209 GQAAGTIADMRSDWASDQRNGVYWRGA 235
>01_05_0110 +
18225431-18226992,18227158-18228132,18228343-18228437,
18228556-18228842
Length = 972
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 5 DEISDCFRLTGLRCSRTFPSGAIPS 79
D++ +CF+L L+ S +G+IPS
Sbjct: 576 DDLGNCFKLQSLKMSNNSLNGSIPS 600
>01_01_0994 -
7861310-7862119,7862378-7862498,7862718-7862901,
7862975-7863070,7863428-7863476,7863555-7863596,
7863684-7863836,7865631-7865705,7866462-7866587
Length = 551
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 2 QDEISDCFRLTGLRCSRTFPSGAIPSRGVPRCGHPS 109
+D++SD T + S G +P G P GHP+
Sbjct: 492 EDKLSDIPEQTEAQASELVKEGPVPVEGKPIDGHPT 527
>06_03_0716 - 23831590-23832159
Length = 189
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 133 PGDRVGTTAGMATAWYATAGNGTRWEGAAATQASKAETIRN 11
PGD + +G A AG G RW+ A + A+T R+
Sbjct: 97 PGDGRTSCSGEAEDRGGRAGGGDRWQTCDAEDGAAADTERS 137
>06_01_0450 +
3185342-3185645,3185761-3185837,3185948-3186028,
3186508-3186636,3186765-3186851,3186962-3187015,
3187432-3187522,3187615-3187685,3187770-3187839,
3187988-3188040,3188132-3188225,3188569-3188666,
3190126-3190209
Length = 430
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 7/45 (15%)
Frame = +3
Query: 249 AVVNTNLAQEQAVDGV----WAVEDKKWQA-LDALKT--AEAQLD 362
AVV+T + + GV WA+++ KWQA +D++K EA++D
Sbjct: 282 AVVDTRYSVVVPIIGVQGFRWAIDNNKWQARVDSIKPLFEEARID 326
>04_01_0308 + 4188726-4190351
Length = 541
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 288 DGVWAVEDKKWQALDALKTAEAQLDGAVASQAVQLAK 398
D VW +E K Q L E QL+ A+QA+ K
Sbjct: 5 DRVWELEHKNTQLLHEKGKLEKQLETKAAAQAISSQK 41
>03_03_0110 - 14523712-14525183,14525482-14525749
Length = 579
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 225 NAENYNVKAVVNTNLAQEQAVDGVWAVEDKKWQALDALKTAEAQLDGAVASQAV 386
NAE V V+ ++A + VWA E +K+ A+ AL+ A + A +AV
Sbjct: 509 NAEAGKVALVIMGSVAYGCPLWDVWASEAEKFTAVAALEATMATNEMRCAQEAV 562
>02_05_0938 +
32901143-32901215,32901841-32901982,32902243-32902314,
32902573-32902644,32902711-32902782,32902913-32902948,
32903001-32903072,32903319-32903387,32903483-32903554,
32903668-32903739,32903838-32903909,32904153-32904224,
32904470-32904541,32904623-32904694,32904782-32904853,
32904911-32905003,32905150-32905218,32905315-32905386,
32905479-32905552,32905643-32905771,32905966-32906331,
32906584-32906954,32907522-32907890
Length = 884
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 5 DEISDCFRLTGLRCSRTFPSGAIP 76
D IS C L L S + SGAIP
Sbjct: 288 DNISSCMNLISLNLSSNYLSGAIP 311
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,747,014
Number of Sequences: 37544
Number of extensions: 301413
Number of successful extensions: 1155
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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