Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2316
         (534 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    26   0.69 
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          25   1.6  
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            23   4.9  
AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.           23   4.9  
AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.           23   4.9  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    23   8.5  

>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 26.2 bits (55), Expect = 0.69
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +1

Query: 97  WPSQLLSPLYHLETFKLQRSTPRSKPLISPKRRPTK 204
           WPS    P           S PRS+P   PKR P +
Sbjct: 268 WPSCRSPPARRRSRSTRPTSWPRSRPTSKPKRLPRR 303


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 136 SPGDRVGTTAGMATAWYATAGNGTRWEGAAATQASKAETI 17
           S G    +TAG+      TAG GT  +G   +  S+++++
Sbjct: 374 SSGSNANSTAGLNNNEPDTAGGGTVGDGKKRSSRSRSKSL 413


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +1

Query: 34  WPALQPHLPIWCHSQPWRTTLWP 102
           W  L   +PI C   PW   L P
Sbjct: 557 WDPLTDTVPIHCWIHPWTELLGP 579


>AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -3

Query: 136 SPGDRVGTTAGMATAWYATAGNGTRWEGAAATQAS 32
           SPGD+  TT   AT         T W     T+A+
Sbjct: 92  SPGDQTTTTLRPATTTLRPTTTTTDWITTTTTEAT 126


>AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -3

Query: 136 SPGDRVGTTAGMATAWYATAGNGTRWEGAAATQAS 32
           SPGD+  TT   AT         T W     T+A+
Sbjct: 92  SPGDQTTTTLRPATTTLRPTTTTTDWITTTTTEAT 126


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 154 STPRSKPLISPKRRPTKPSQSMNKTQK 234
           ++PR  P   P+R   +P Q   + Q+
Sbjct: 199 ASPRQPPTPLPRRSSAQPQQQQQQQQR 225


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 527,860
Number of Sequences: 2352
Number of extensions: 10073
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 49474503
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)