Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2316
(534 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81553-5|CAB04494.1| 382|Caenorhabditis elegans Hypothetical pr... 29 2.1
AM231685-1|CAJ77754.1| 375|Caenorhabditis elegans GDP-mannose 4... 29 2.1
U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1... 29 2.8
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 29 2.8
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 29 2.8
AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR... 29 2.8
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 29 2.8
AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical ... 29 2.8
U15167-1|AAB66360.1| 445|Caenorhabditis elegans serotonin recep... 27 6.4
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 27 6.4
AC084154-13|AAK29875.2| 445|Caenorhabditis elegans Serotonin/oc... 27 6.4
AC199241-2|ABO33280.1| 221|Caenorhabditis elegans Hypothetical ... 27 8.5
>Z81553-5|CAB04494.1| 382|Caenorhabditis elegans Hypothetical
protein F56H6.5 protein.
Length = 382
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 135 LQVIEWGQQLGWPQRGTPRLGMAPDGKVRLQRRPVRRKQSEISS 4
L E G+QL W G +G DG VR++ P + +E+ +
Sbjct: 298 LAFAEIGEQLVWEGEGVDEVGKNQDGVVRVKVSPKYYRPTEVET 341
>AM231685-1|CAJ77754.1| 375|Caenorhabditis elegans GDP-mannose
4,6-dehydratase protein.
Length = 375
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 135 LQVIEWGQQLGWPQRGTPRLGMAPDGKVRLQRRPVRRKQSEISS 4
L E G+QL W G +G DG VR++ P + +E+ +
Sbjct: 291 LAFAEIGEQLVWEGEGVDEVGKNQDGVVRVKVSPKYYRPTEVET 334
>U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1,
isoform c protein.
Length = 942
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 263 SVHNGFDVVIFCVLFIDCDGFV 198
SV G DV +FC + +D +GF+
Sbjct: 178 SVSKGIDVTLFCCINVDPEGFI 199
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 263 SVHNGFDVVIFCVLFIDCDGFV 198
SV G DV +FC + +D +GF+
Sbjct: 178 SVSKGIDVTLFCCINVDPEGFI 199
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 263 SVHNGFDVVIFCVLFIDCDGFV 198
SV G DV +FC + +D +GF+
Sbjct: 178 SVSKGIDVTLFCCINVDPEGFI 199
>AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR-1
protein.
Length = 942
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 263 SVHNGFDVVIFCVLFIDCDGFV 198
SV G DV +FC + +D +GF+
Sbjct: 178 SVSKGIDVTLFCCINVDPEGFI 199
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 263 SVHNGFDVVIFCVLFIDCDGFV 198
SV G DV +FC + +D +GF+
Sbjct: 178 SVSKGIDVTLFCCINVDPEGFI 199
>AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical
protein Y71D11A.1 protein.
Length = 506
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +1
Query: 28 PYWPALQPHLPIWCHSQ-PWRTTLW-PSQLLSPLYHLET----FKLQRSTPRSKPLIS 183
PY A++P+LPIW + P W P + ++ LE L TP+S+ LIS
Sbjct: 149 PYVVAVEPNLPIWSIIETPVAAIDWDPEESYRLMFWLEDSHKGIDLVEETPKSRELIS 206
>U15167-1|AAB66360.1| 445|Caenorhabditis elegans serotonin receptor
precursor protein.
Length = 445
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 142 KLQRSTPRSKPLISPKRRPTKPSQSMNKTQK 234
K+ RSKP I +RR TK S M + +K
Sbjct: 335 KIDEENGRSKPGIVKRRRRTKESNEMKRERK 365
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 27.5 bits (58), Expect = 6.4
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 22 FPPYWPALQPHLPIW 66
FPP+WP P P W
Sbjct: 435 FPPFWPPCPPPPPFW 449
>AC084154-13|AAK29875.2| 445|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 4 protein.
Length = 445
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 142 KLQRSTPRSKPLISPKRRPTKPSQSMNKTQK 234
K+ RSKP I +RR TK S M + +K
Sbjct: 335 KIDEENGRSKPGIVKRRRRTKESNEMKRERK 365
>AC199241-2|ABO33280.1| 221|Caenorhabditis elegans Hypothetical
protein 2RSSE.2 protein.
Length = 221
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 184 PKRRPTKPSQSMNKTQKITTSKPL*TLI*LRNRLSMVFGQLRI 312
P + +P ++ T + TT KP+ T+ L NRLS G++ I
Sbjct: 4 PTIQENEPMRNQPSTSRATT-KPMPTMARLNNRLSSSVGEVLI 45
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,526,953
Number of Sequences: 27780
Number of extensions: 232074
Number of successful extensions: 687
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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