Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2316
(534 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 23 1.5
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 3.4
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 3.4
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 22 4.5
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 4.5
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 22 4.5
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 22 4.5
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 22 4.5
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 22 4.5
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 22 4.5
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 22 4.5
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 4.5
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 22 4.5
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 21 6.0
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 21 7.9
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 23.4 bits (48), Expect = 1.5
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 473 YQKHRDPTTGRRSQDRRGR 529
Y+++R+ T+ RS+DRRGR
Sbjct: 304 YREYRE-TSRERSRDRRGR 321
Score = 21.8 bits (44), Expect = 4.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 307 RIRNGKPWTLSKQLKRN 357
R+ GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 22.2 bits (45), Expect = 3.4
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 101 HPSCCPHSITW 133
HP PH ITW
Sbjct: 357 HPQAGPHFITW 367
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 22.2 bits (45), Expect = 3.4
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 101 HPSCCPHSITW 133
HP PH ITW
Sbjct: 357 HPQAGPHFITW 367
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.8 bits (44), Expect = 4.5
Identities = 8/41 (19%), Positives = 21/41 (51%)
Frame = +1
Query: 304 LRIRNGKPWTLSKQLKRN*TVQWLVRPYS*LRAPWELHLTL 426
+++ K + +++++ W++ P S R W+L + L
Sbjct: 57 MKLFGSKKALMKERIRQKAAGHWVIHPCSSFRFYWDLCMLL 97
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.8 bits (44), Expect = 4.5
Identities = 8/41 (19%), Positives = 21/41 (51%)
Frame = +1
Query: 304 LRIRNGKPWTLSKQLKRN*TVQWLVRPYS*LRAPWELHLTL 426
+++ K + +++++ W++ P S R W+L + L
Sbjct: 57 MKLFGSKKALMKERIRQKAAGHWVIHPCSSFRFYWDLCMLL 97
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 4.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 307 RIRNGKPWTLSKQLKRN 357
R+ GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 4.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 307 RIRNGKPWTLSKQLKRN 357
R+ GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 4.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 307 RIRNGKPWTLSKQLKRN 357
R+ GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 4.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 307 RIRNGKPWTLSKQLKRN 357
R+ GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 4.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 307 RIRNGKPWTLSKQLKRN 357
R+ GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.8 bits (44), Expect = 4.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 307 RIRNGKPWTLSKQLKRN 357
R+ GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.8 bits (44), Expect = 4.5
Identities = 8/41 (19%), Positives = 21/41 (51%)
Frame = +1
Query: 304 LRIRNGKPWTLSKQLKRN*TVQWLVRPYS*LRAPWELHLTL 426
+++ K + +++++ W++ P S R W+L + L
Sbjct: 57 MKLFGSKKALMKERIRQKAAGHWVIHPCSSFRFYWDLCMLL 97
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.8 bits (44), Expect = 4.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 242 RQSRCEH*SSSGTGCRW 292
R+SRC S+ +G RW
Sbjct: 15 RESRCSVRCSAASGLRW 31
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 6.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 307 RIRNGKPWTLSKQLKR 354
R+ GKP T S +LKR
Sbjct: 134 RVLPGKPTTTSDELKR 149
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 225 NAENYNVKAVVNTNLAQEQAVDGVW 299
NA+ AV+NTN+ + VW
Sbjct: 97 NADPQYSSAVINTNVIVSHTGEVVW 121
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,549
Number of Sequences: 438
Number of extensions: 2784
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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