Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2315
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   4.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   4.0  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    25   9.1  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   9.1  

>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +3

Query: 51  SQKPQPRNKDNT*PLPLRPEFTTEK--NTVLCVTSDLPTCISARLLSSVTSRFAKISEQG 224
           +Q  + R KDN   L   PE + ++    +   TSD P+ +    +SS  S+F K     
Sbjct: 241 NQLNRRRTKDN---LTNNPEISLDEPIKALPSTTSDAPSSLLNTNVSSSPSKFRKFLSSV 297

Query: 225 RPSTSD*NVVLDLTCCIRFRKS 290
            P+ +D +    LT   R   S
Sbjct: 298 IPAKTDLSAKESLTSSTRLSTS 319


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 129 TVLCVTSDLPTCISARLLSSVTSRFAKISEQGRPST 236
           +VL  +S +PT  S+   SS+T+  + IS    PST
Sbjct: 537 SVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPST 572


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
 Frame = +3

Query: 24  PQIYREGEASQKPQPRNK---DNT*PLPLRPEFTTEKNTVLCVTSDLPTCISARLLSSVT 194
           P++Y E +       +N+   DN  P P          ++      +  C S  L ++  
Sbjct: 112 PEVYFENDTLYLANLKNQNIGDNVIPYPNNKAVKVSAKSLRSCNISISNCSSVNLHNATK 171

Query: 195 SRFAKISEQGRPSTSD*NVVLDLTCCIRFR 284
             F   + QG    SD N       C +FR
Sbjct: 172 CNFTFPTIQGSIHLSDINDSTICVSCHQFR 201


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 162 CISARLLSSVTSRFAKISEQGR 227
           C+   +LSS+ SRF ++SEQ R
Sbjct: 184 CLEWAVLSSLDSRFLQLSEQIR 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,714
Number of Sequences: 5004
Number of extensions: 49772
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)