Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2315
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427...    28   7.1  
10_02_0110 - 5371536-5372882                                           27   9.4  

>12_02_0588 -
           20842209-20842337,20842464-20842560,20842620-20842733,
           20843140-20843749,20844739-20845462,20845542-20845620,
           20845783-20845865,20846148-20846226,20846332-20846420,
           20846499-20846591,20847288-20847337,20847417-20847600,
           20849227-20849542,20849626-20849657
          Length = 892

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 109 SGRSGSGYVLSLFLGCGFCEASPSLYICGGAC 14
           SG  GSG+    FLG   C+A   L++ G  C
Sbjct: 245 SGVPGSGHSTRWFLGYTCCDACGRLFVKGNYC 276


>10_02_0110 - 5371536-5372882
          Length = 448

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 153 LPTCISARLLSSVTSRFAKISEQGRPSTS-D*NVVLDL 263
           +PT   ARLL    S F +  E  RP TS +  VVL+L
Sbjct: 133 VPTAAGARLLGPSLSPFVEDGEYSRPVTSRNGRVVLEL 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,841,007
Number of Sequences: 37544
Number of extensions: 301695
Number of successful extensions: 619
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)