Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2315
         (635 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217281-1|AAF27637.1| 1616|Drosophila melanogaster ecdysone-ind...    32   0.75 
AE014296-1440|AAF50429.2| 1616|Drosophila melanogaster CG32356-P...    32   0.75 
X55702-1|CAA39229.1|  390|Drosophila melanogaster polycomb prote...    29   7.0  
AY071619-1|AAL49241.1|  390|Drosophila melanogaster RE66837p pro...    29   7.0  
AY052142-1|AAK93566.1| 1367|Drosophila melanogaster SD09926p pro...    29   7.0  
AF097636-1|AAF63187.1| 1368|Drosophila melanogaster bicoid-inter...    29   7.0  
AE014296-3518|AAF51707.1|  390|Drosophila melanogaster CG32443-P...    29   7.0  
AE013599-166|AAM68350.1| 1367|Drosophila melanogaster CG8276-PB,...    29   7.0  
AE013599-165|AAF57267.2| 1367|Drosophila melanogaster CG8276-PA,...    29   7.0  

>AF217281-1|AAF27637.1| 1616|Drosophila melanogaster
           ecdysone-inducible gene E1 protein.
          Length = 1616

 Score = 31.9 bits (69), Expect = 0.75
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 39  EGEASQKPQPRNKDNT*PLPLRPEFTTEKNTVLCVTSDLP 158
           E E  Q   P N D   P+ + PE TTE+  +   T++LP
Sbjct: 733 EAEHGQLTYPTNDDELAPVEIEPELTTEEPEIAENTTELP 772


>AE014296-1440|AAF50429.2| 1616|Drosophila melanogaster CG32356-PA,
           isoform A protein.
          Length = 1616

 Score = 31.9 bits (69), Expect = 0.75
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 39  EGEASQKPQPRNKDNT*PLPLRPEFTTEKNTVLCVTSDLP 158
           E E  Q   P N D   P+ + PE TTE+  +   T++LP
Sbjct: 733 EAEHGQLTYPTNDDELAPVEIEPELTTEEPEIAENTTELP 772


>X55702-1|CAA39229.1|  390|Drosophila melanogaster polycomb protein
           protein.
          Length = 390

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 19  HRHKYIEREKPRKSRNQGIKTIHNHYHSARSLRLR 123
           H H +I+ E+    R++   T H+H+H   S R R
Sbjct: 139 HHHHHIKSERNSGRRSESPLTHHHHHHHHESKRQR 173


>AY071619-1|AAL49241.1|  390|Drosophila melanogaster RE66837p
           protein.
          Length = 390

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 19  HRHKYIEREKPRKSRNQGIKTIHNHYHSARSLRLR 123
           H H +I+ E+    R++   T H+H+H   S R R
Sbjct: 139 HHHHHIKSERNSGRRSESPLTHHHHHHHHESKRQR 173


>AY052142-1|AAK93566.1| 1367|Drosophila melanogaster SD09926p
           protein.
          Length = 1367

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 25  HKYIEREKPRKSRNQGIKTIHNHYHSARSLR 117
           HK   R K R+  +QGI   H+H+H    L+
Sbjct: 902 HKKTRRGKRRRKVHQGIHHHHHHHHDLEQLQ 932


>AF097636-1|AAF63187.1| 1368|Drosophila melanogaster
           bicoid-interacting protein BIN3 protein.
          Length = 1368

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 25  HKYIEREKPRKSRNQGIKTIHNHYHSARSLR 117
           HK   R K R+  +QGI   H+H+H    L+
Sbjct: 903 HKKTRRGKRRRKVHQGIHHHHHHHHDLEQLQ 933


>AE014296-3518|AAF51707.1|  390|Drosophila melanogaster CG32443-PA
           protein.
          Length = 390

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 19  HRHKYIEREKPRKSRNQGIKTIHNHYHSARSLRLR 123
           H H +I+ E+    R++   T H+H+H   S R R
Sbjct: 139 HHHHHIKSERNSGRRSESPLTHHHHHHHHESKRQR 173


>AE013599-166|AAM68350.1| 1367|Drosophila melanogaster CG8276-PB,
           isoform B protein.
          Length = 1367

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 25  HKYIEREKPRKSRNQGIKTIHNHYHSARSLR 117
           HK   R K R+  +QGI   H+H+H    L+
Sbjct: 902 HKKTRRGKRRRKVHQGIHHHHHHHHDLEQLQ 932


>AE013599-165|AAF57267.2| 1367|Drosophila melanogaster CG8276-PA,
           isoform A protein.
          Length = 1367

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 25  HKYIEREKPRKSRNQGIKTIHNHYHSARSLR 117
           HK   R K R+  +QGI   H+H+H    L+
Sbjct: 902 HKKTRRGKRRRKVHQGIHHHHHHHHDLEQLQ 932


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,034,322
Number of Sequences: 53049
Number of extensions: 525111
Number of successful extensions: 1050
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)