Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2314
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    32   0.073
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    27   2.1  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    27   2.7  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   3.6  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    25   8.3  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   8.3  

>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 31.9 bits (69), Expect = 0.073
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = +3

Query: 267 NFLVVVVSGRGRDYYHKLKQIAELKVGILTQCIKEDTATRRMNPQTARNILLKVNSKLMG 446
           ++L  ++     + Y  +K++    +G+ +QC       +   PQ   N+ +K+N K+ G
Sbjct: 499 DYLFFILDKNSPEPYGSIKRVCNTMLGVPSQCAISKHILQS-KPQYCANLGMKINVKVGG 557

Query: 447 INQAL 461
           IN +L
Sbjct: 558 INCSL 562


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 18  QFTVPKKGVWQANCLLKPEALNSWGFI 98
           Q+ +P++G+ Q+N  L  E L  W  I
Sbjct: 502 QYEIPRRGILQSNAFLAQEQLLFWKVI 528


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 134 FIITSTWIQFYGNEAP*IQSFRFQKTVGLPYSLLWY 27
           F  T TW   +  + P +QSFR    + +P +  +Y
Sbjct: 313 FFATITWDNLWTQDPPPMQSFRPNYNIAIPNAPAYY 348


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 317 AETDCRTQSGYT--DAVYQRRYRHAPNEPTNSSEHFTKGEF 433
           A  + R  + YT   +  +  YR  PNEP NS+ + T   F
Sbjct: 80  ASINSRRVASYTVQSSPSRTTYRQLPNEPQNSAAYTTYSSF 120


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = -3

Query: 413 VPSCLWVHSARGGIFFDTLRQYTHFEFGNLFQLVIIIAAPSRNDHDQEIDLFF 255
           +P  +W+++  GG+    L  +TH     +  L+ +  A + + H   ID  +
Sbjct: 172 LPLGVWLYTVSGGLKSTFLSDWTHTVIVYIVILITLFVAYTSSVHIGSIDKMY 224


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
 Frame = +3

Query: 213  IRINDLHKSMLHALEKQVNFLVVVVSGRGRDYYHKLKQIAELK--------VGILTQCIK 368
            IRI+  H +      KQ    + +    G+DY + LK   +L+         G+    + 
Sbjct: 1950 IRISHFHHTFEVISSKQRPRRLTIHGSDGKDYQYVLKGHEDLRQDERVMQLFGLCNTLLT 2009

Query: 369  EDTAT--RRMNPQTARNILLKVNSKLMG 446
             D+ T  RR+N +    I L  NS L+G
Sbjct: 2010 TDSETFKRRLNIERYTVIPLSPNSGLLG 2037


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,880,152
Number of Sequences: 5004
Number of extensions: 63914
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)