Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2313
         (618 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.67 
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   3.6  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   3.6  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    22   3.6  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    22   3.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   6.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.3  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 578 PGPLVVMKTSGCHRGSPSLPLDTANI 501
           PG      TSG    SP +P+ T N+
Sbjct: 103 PGSSTTSATSGAVMASPPMPITTDNV 128


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 537 PVASAGFHHHQRA 575
           P  SA  HHHQ A
Sbjct: 3   PYVSAAHHHHQAA 15


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 537 PVASAGFHHHQRA 575
           P  SA  HHHQ A
Sbjct: 62  PYVSAAHHHHQAA 74


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 537 PVASAGFHHHQRA 575
           P  SA  HHHQ A
Sbjct: 3   PYVSAAHHHHQAA 15


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 537 PVASAGFHHHQRA 575
           P  SA  HHHQ A
Sbjct: 62  PYVSAAHHHHQAA 74


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 371 HFQIYKHNFWDFDSSILWPEIQHSL 297
           HF+  K  F D   S+L  ++ H+L
Sbjct: 2   HFKHRKQRFVDIGDSLLTLKLTHAL 26


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 35  RAADYRKQLHA 3
           RA DYR+++HA
Sbjct: 86  RAEDYRQEVHA 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,551
Number of Sequences: 336
Number of extensions: 3891
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)