Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2313
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    28   1.2  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    27   1.6  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    26   3.8  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    26   5.0  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    25   6.6  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   6.6  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.8  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   8.8  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 317 PEIQHSLYNVTIQ*GNVTMKSEVAGPRSWNNVSGEDVFSYQT 192
           PE    LY+ +    N TM SE  GP+S +++S   + +Y +
Sbjct: 25  PETLKCLYDESEDNNNFTMHSESIGPKSLDSLSPRRLSNYSS 66


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 220 ETLFQLRGPATSDFIVTFPYWIVTLYRLC*ISG 318
           +T +++R        +TFPYWI+    +  +SG
Sbjct: 219 QTFYEIREAGLDHVRITFPYWILYSNEITNVSG 251


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 481 LY*VFVTMFAVSSGSDGLPRWHPLVFIT 564
           LY +F+++F   S +D +  W P+ F T
Sbjct: 305 LYLLFLSLFRTQSFNDSMEHWVPVCFPT 332


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 232 GTTFQAKTFSVIKQTPVLFSWPIIYGASYSQGKSHAQPPT 113
           G +  A + ++   TP + S P++ G+     +SH  P T
Sbjct: 80  GVSLNAASPTIHSNTPTVVSHPVMSGSELKGEESHNSPGT 119


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 397 PTHLDRLREIKYGVCAGTFRNRNTGIKFLY*VFVTMFAVSSGS 525
           P   D++ ++   VC  T  +RN G   LY    T+  ++S S
Sbjct: 289 PKIYDKMSDLLAQVCTNTDSSRNAGNAILYQAVRTILDLNSDS 331


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 572 PLVVMKTSGCHRGSPSLPLDTANIVTNTQYKNFIPVLRFRKV 447
           PL+V++       SP+L LD    + +TQ  +   + +FRK+
Sbjct: 675 PLIVVREECTDLKSPTLFLDVGRALVHTQLVDDAIIDKFRKL 716


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 590 PGKPPGPLVVMKTSGCHRGSP 528
           PG+PP P   +  + CH+ SP
Sbjct: 136 PGEPPLPNEPVPETNCHKESP 156


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 506 LPYQAVAMDYPGGIRWFSSPPAGP 577
           +PY  V M  P  +RW+S+  A P
Sbjct: 521 VPYDDVIMPDPSSLRWWSASFAQP 544


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,834
Number of Sequences: 5004
Number of extensions: 61179
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)