Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2313
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0058 + 13015401-13016654                                         30   1.3  
07_03_0651 + 20287661-20287701,20288034-20288124,20288737-202888...    29   3.0  
04_03_0096 + 11158108-11159083,11159116-11159744                       29   3.0  
04_04_0880 + 29046842-29046990,29047467-29047701,29048132-290482...    28   5.2  
01_06_0898 - 32832665-32832724,32832761-32832815,32832957-328331...    28   6.8  
09_03_0082 + 12166464-12166526,12167350-12167376,12167921-121679...    27   9.0  
05_01_0128 + 866817-866859,867789-867874,868142-868231,868337-87...    27   9.0  
01_04_0047 - 15408802-15409068,15409418-15409478,15409516-154096...    27   9.0  

>12_02_0058 + 13015401-13016654
          Length = 417

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 617 DPGRGSPINPGKPPGPLVVMKTSGCHRGSPSLPL 516
           DP   +P++P +PP P     T G H   PS+P+
Sbjct: 270 DPFESAPLDPFEPP-PAAASVTGGHHTPQPSVPV 302


>07_03_0651 +
           20287661-20287701,20288034-20288124,20288737-20288831,
           20289433-20289523,20290066-20290250,20290590-20290647,
           20290812-20290852,20290935-20291009,20292298-20292354,
           20292480-20292546,20292754-20292900,20292986-20293210,
           20293332-20293493,20293570-20293647,20293735-20293812
          Length = 496

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 584 KPPGPLVVMKTSGCHRGSPSLPLDTANIVTNTQYKNFIPVLRFRKVPAHTPYL 426
           K PG +V+   SG H   PS  ++ ++ VT   +   +    F ++   TPY+
Sbjct: 316 KVPGSVVISARSGSHSFDPS-QINVSHYVTQFSFGKRLSAKMFNELKRLTPYV 367


>04_03_0096 + 11158108-11159083,11159116-11159744
          Length = 534

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 413 RSRCVGRRINSKLFHFQIYKHNFWD 339
           R RC GR +  + FHF    ++ WD
Sbjct: 101 RRRCAGRHVPLRSFHFACDSYHVWD 125


>04_04_0880 +
           29046842-29046990,29047467-29047701,29048132-29048227,
           29048887-29048958,29049091-29049195
          Length = 218

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +1

Query: 370 WNSFEFIRRPTHLDRLREIK----YGVCAGTFRNRNTGIKFLY*VFVTM-FAVSSGSDGL 534
           W S   IR    L  LRE K    Y +  G + NR +   +L  + +     V+SG + +
Sbjct: 116 WGSLHQIRCHAILGTLREHKDSDEYVIPCGDWFNRVSCPHYLAELVIYFGMLVASGGEDI 175

Query: 535 PRWHPLVFITTS 570
           P W   VF+ T+
Sbjct: 176 PVWFLFVFVITN 187


>01_06_0898 -
           32832665-32832724,32832761-32832815,32832957-32833135,
           32833218-32833328,32833600-32833647,32833810-32833949,
           32834402-32834539,32834660-32834804,32834936-32835002,
           32835226-32835329,32835444-32835647
          Length = 416

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = -3

Query: 301 VYTTSLSNKEMSL*----NQKSRDLGVGTTFQAKTFSVIKQTPVLFS 173
           +YT S+++   SL     N+ ++     TT Q +TFS++ + PVL S
Sbjct: 322 IYTVSVNSHTGSLSRTHKNKSNKSKSPVTTIQYRTFSLVARCPVLLS 368


>09_03_0082 +
           12166464-12166526,12167350-12167376,12167921-12167993,
           12168517-12168773
          Length = 139

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 611 GRGSPINPGKPPGPLVVMKTSGCHRGSPSLP 519
           G  S     + P PL  + T  C+R SPSLP
Sbjct: 40  GSASSATDHRSPPPLGDINTIVCYRSSPSLP 70


>05_01_0128 +
           866817-866859,867789-867874,868142-868231,868337-870214,
           870606-870795,870888-871483
          Length = 960

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -1

Query: 147 IHRGKVTHSHPLN 109
           +HRG+VTHS PLN
Sbjct: 363 MHRGRVTHSAPLN 375


>01_04_0047 -
           15408802-15409068,15409418-15409478,15409516-15409626,
           15409707-15409958,15410044-15410270,15410971-15411230,
           15411373-15412279,15412370-15412567
          Length = 760

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 22/87 (25%), Positives = 39/87 (44%)
 Frame = -3

Query: 457 SEKFPRIPHI*FHANDQDVSVGG*IQNCSIFKFINTISGILILRSFGPKFNTVYTTSLSN 278
           S + P IP+I    ND  +          +++FI  +S I  + S   + N+ +TT+L+ 
Sbjct: 670 STQIPEIPYIAQRFNDTTILNVA----ADLYRFIRAMSAIQEVSSMTTRVNSQWTTNLNL 725

Query: 277 KEMSL*NQKSRDLGVGTTFQAKTFSVI 197
            E    N    D+    T+  KT + +
Sbjct: 726 SESGRKN-ICNDMYTTYTYDEKTVAPV 751


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,587,169
Number of Sequences: 37544
Number of extensions: 405268
Number of successful extensions: 956
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)