Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2313
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000264-4|AAC71125.3|  631|Caenorhabditis elegans Hypothetical ...    33   0.22 
Z81553-8|CAB04497.1|  408|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z49938-2|CAA90187.1|  306|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF040652-4|AAB95021.2|  736|Caenorhabditis elegans Hypothetical ...    28   6.1  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    27   8.1  

>AF000264-4|AAC71125.3|  631|Caenorhabditis elegans Hypothetical
           protein F43E2.3 protein.
          Length = 631

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +1

Query: 379 FEFIRRPTHLDRLREIKY--GVCAGTFRNRNTGIKFLY 486
           F  +  P H D  R I+Y   VC GT  N   G+K LY
Sbjct: 551 FLSLTHPIHADYCRRIRYKAAVCIGTLANSEIGLKALY 588


>Z81553-8|CAB04497.1|  408|Caenorhabditis elegans Hypothetical
           protein F56H6.8 protein.
          Length = 408

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = -1

Query: 192 KRPFYFRGRSFTGLAIHRGKVTHSHPLNKYSGHISVFTRT*LAGYCPIFTYRTRG 28
           K  F+  G  +  + I+ G  T S  L +YSG++  FTRT  +G   + T+++ G
Sbjct: 341 KFTFFDTGNDY--VTIYDGPSTESPILGRYSGNMYEFTRT-SSGSTMVVTFKSDG 392


>Z49938-2|CAA90187.1|  306|Caenorhabditis elegans Hypothetical
           protein F38A3.1 protein.
          Length = 306

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 609 PGQPNQSGQTTGPA-GGDENQRMPPG 535
           PGQP Q+GQ  GP   G++ Q   PG
Sbjct: 252 PGQPGQAGQPGGPGDAGNDGQPGQPG 277


>AF040652-4|AAB95021.2|  736|Caenorhabditis elegans Hypothetical
           protein T05A8.4 protein.
          Length = 736

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -1

Query: 498 HKHSVQKLYSGVTVPKSSRAYPIFNF 421
           H+H + +LY+ +T+ +  R+ P FN+
Sbjct: 279 HRHDIAELYTKITLGEMRRSLPHFNW 304


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
            F18C12.2b protein.
          Length = 2271

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
 Frame = -2

Query: 488  QYKNFIP--VLRFRKVPAHTPYLISRKRSRCVGRRINSKLFHFQIYKHNFWDFDSSILW- 318
            Q  NF+P  V+  ++     P ++ ++R+R V   +N KLF +Q  K +     + ++W 
Sbjct: 728  QKLNFLPKRVIDEKQQQRQQPVVLRKRRNR-VRPNVNWKLFAYQFSKDH---SQADLIWN 783

Query: 317  ----PEIQHSLYNVTIQ*GNVTMKSEVAGPRSWNNVSGEDVFSYQTNARSIFVAD-HLRG 153
                 E +H++   T    +   ++    P +WN+   E    Y +    I + D +LR 
Sbjct: 784  EKTREEFRHAMDTETRALISEKEQAPTGLPIAWNHT--EFQIRYPSLLEEIKIGDYYLRL 841

Query: 152  *LFTGEKSRTATH 114
             L   +++ T  H
Sbjct: 842  LLIEADENATPIH 854


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
            F18C12.2a protein.
          Length = 2279

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
 Frame = -2

Query: 488  QYKNFIP--VLRFRKVPAHTPYLISRKRSRCVGRRINSKLFHFQIYKHNFWDFDSSILW- 318
            Q  NF+P  V+  ++     P ++ ++R+R V   +N KLF +Q  K +     + ++W 
Sbjct: 728  QKLNFLPKRVIDEKQQQRQQPVVLRKRRNR-VRPNVNWKLFAYQFSKDH---SQADLIWN 783

Query: 317  ----PEIQHSLYNVTIQ*GNVTMKSEVAGPRSWNNVSGEDVFSYQTNARSIFVAD-HLRG 153
                 E +H++   T    +   ++    P +WN+   E    Y +    I + D +LR 
Sbjct: 784  EKTREEFRHAMDTETRALISEKEQAPTGLPIAWNHT--EFQIRYPSLLEEIKIGDYYLRL 841

Query: 152  *LFTGEKSRTATH 114
             L   +++ T  H
Sbjct: 842  LLIEADENATPIH 854


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
            protein RME-8 protein.
          Length = 2279

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
 Frame = -2

Query: 488  QYKNFIP--VLRFRKVPAHTPYLISRKRSRCVGRRINSKLFHFQIYKHNFWDFDSSILW- 318
            Q  NF+P  V+  ++     P ++ ++R+R V   +N KLF +Q  K +     + ++W 
Sbjct: 728  QKLNFLPKRVIDEKQQQRQQPVVLRKRRNR-VRPNVNWKLFAYQFSKDH---SQADLIWN 783

Query: 317  ----PEIQHSLYNVTIQ*GNVTMKSEVAGPRSWNNVSGEDVFSYQTNARSIFVAD-HLRG 153
                 E +H++   T    +   ++    P +WN+   E    Y +    I + D +LR 
Sbjct: 784  EKTREEFRHAMDTETRALISEKEQAPTGLPIAWNHT--EFQIRYPSLLEEIKIGDYYLRL 841

Query: 152  *LFTGEKSRTATH 114
             L   +++ T  H
Sbjct: 842  LLIEADENATPIH 854


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,736,475
Number of Sequences: 27780
Number of extensions: 362060
Number of successful extensions: 1103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)