Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2313
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.45 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.45 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.6  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
 Frame = -2

Query: 614 PGRGSPINPGKPPG-----PLVVMKTSGCHRGSPSLPLD-TANIVTNTQY-KNFIPVLRF 456
           P RG+ + P    G     PLVV  TSG  RG P   LD   ++     + K  I  LRF
Sbjct: 19  PSRGNAV-PSSQRGNVHNDPLVVETTSGLVRGFPRTVLDKEVHVFYGIPFAKPPIGPLRF 77

Query: 455 RK 450
           RK
Sbjct: 78  RK 79


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
 Frame = -2

Query: 614 PGRGSPINPGKPPG-----PLVVMKTSGCHRGSPSLPLD-TANIVTNTQY-KNFIPVLRF 456
           P RG+ + P    G     PLVV  TSG  RG P   LD   ++     + K  I  LRF
Sbjct: 19  PSRGNAV-PSSQRGNVHNDPLVVETTSGLVRGFPRTVLDKEVHVFYGIPFAKPPIGPLRF 77

Query: 455 RK 450
           RK
Sbjct: 78  RK 79


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/16 (68%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
 Frame = -2

Query: 614 PGRGSPINP--GKPPG 573
           P RGSP NP  G PPG
Sbjct: 34  PQRGSPPNPSQGPPPG 49


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 587 GKPPGPLVVMKTSGCHRGSPSLPLDTA 507
           G   G   + K +GC   S S+PL +A
Sbjct: 785 GSSAGTSSITKYTGCELTSESMPLQSA 811


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 587 GKPPGPLVVMKTSGCHRGSPSLPLDTA 507
           G   G   + K +GC   S S+PL +A
Sbjct: 875 GSSAGTSSITKYTGCELTSESMPLQSA 901


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 356 YKFENGTVLNLSADRHILIVCVKLNMGYARELF 454
           YK  +GT++   A+     +C+KL    AR  F
Sbjct: 196 YKNPDGTIIGDPANIEFTELCMKLGWKSARTRF 228


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 262 IVTFPYWIVTL 294
           +VTFP W VTL
Sbjct: 902 LVTFPVWQVTL 912


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 470 PVLRFRKVPAHTPYLISRKRSR 405
           P+LRF     H P    R++SR
Sbjct: 71  PLLRFENPETHHPIRHGRRQSR 92


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 35 RAADYRKQLHA 3
          RA DYR+++HA
Sbjct: 66 RAEDYRQEVHA 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,690
Number of Sequences: 438
Number of extensions: 4569
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)