Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2312
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    27   1.6  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   5.0  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   6.6  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   6.6  

>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 220 VGSGARVNVFAASSGRVSKTV 282
           V SGARV ++ ASS  V KT+
Sbjct: 57  VTSGARVQIYGASSRSVKKTI 77


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 374 PQKVRNHLTNPNLKKTNLR*TAEALS 297
           PQK+ NHL N  +K +N+    E +S
Sbjct: 538 PQKLSNHLYNLCVKSSNVNYARECIS 563


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -2

Query: 419 TKPKNQKPRTKTRLVPQKVRNHLTNPNLKKTNLR*TAEALSGGRVL--TVFDTRPLLAAN 246
           T P N+KP    RL   + R    N    +++ +   E L+G R+   ++ D + + +  
Sbjct: 433 TSPSNEKPSLSQRLGDSQFRLTKRNTFATESDHQALQEQLTGFRINLDSILDLKKIDSVR 492

Query: 245 TLTRAPLPTRE 213
           T   +P  T +
Sbjct: 493 TSIESPTRTAD 503


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 135 DSYPPRCRERHSHSHGVVSHI 197
           D YPP  +E+H + H ++  +
Sbjct: 225 DQYPPMTKEQHKYIHAMLRQL 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,645,528
Number of Sequences: 5004
Number of extensions: 28491
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)