Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2311
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 346 2e-96
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 203 2e-53
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 185 6e-48
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 142 5e-35
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 103 3e-23
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 102 5e-23
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 96 3e-21
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 56 6e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 35 0.009
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.083
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.15
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.34
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 29 0.44
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 28 1.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.1
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 3.1
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.1
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 5.5
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.5
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 26 5.5
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 7.2
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 25 9.5
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 25 9.5
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 346 bits (850), Expect = 2e-96
Identities = 162/186 (87%), Positives = 168/186 (90%)
Frame = +3
Query: 72 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 251
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 252 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 431
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 432 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVFHTVPIYEGIPHFPTPFCVWTL 611
I+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV HTVPIYEG P L
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA-LPHAIMRLDL 180
Query: 612 GGRDLT 629
GRDLT
Sbjct: 181 AGRDLT 186
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 203 bits (495), Expect = 2e-53
Identities = 94/181 (51%), Positives = 128/181 (70%), Gaps = 1/181 (0%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 269
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 270 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 446
+ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 447 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVFHTVPIYEGIPHFPTPFCVWTLGGRDL 626
N PA+ ++Q VL+LYAS RTTGIVL+ GDG+ H+VPIY+G P+ +GGRD+
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGF-SIPSAIQQEEIGGRDV 190
Query: 627 T 629
T
Sbjct: 191 T 191
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 185 bits (450), Expect = 6e-48
Identities = 85/168 (50%), Positives = 121/168 (72%), Gaps = 2/168 (1%)
Frame = +3
Query: 78 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 251
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 252 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 431
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 432 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVFHTVPIYEGI 575
MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV H VP+YE +
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESV 169
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 142 bits (343), Expect = 5e-35
Identities = 84/212 (39%), Positives = 115/212 (54%), Gaps = 32/212 (15%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 218
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 219 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 377
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 378 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDS 533
LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DS
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDS 186
Query: 534 GDGVFHTVPIYEGIPHFPTPFCVWTLGGRDLT 629
GDGV H +P+ EG + L GRD+T
Sbjct: 187 GDGVTHIIPVAEGYV-IGSSIKTMPLAGRDVT 217
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 103 bits (246), Expect = 3e-23
Identities = 53/164 (32%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 269
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 270 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 446
+ P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 447 FNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVFHTVPIYEG 572
+N P++ I + S Y + + ++GIVL+ G+ H +P+ G
Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNG 185
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 102 bits (244), Expect = 5e-23
Identities = 58/166 (34%), Positives = 88/166 (53%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 255 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 434
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 435 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVFHTVPIYEG 572
MFE+ PA Y+A Q + +ASG+ T ++D G IY+G
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDG 166
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 96.3 bits (229), Expect = 3e-21
Identities = 49/169 (28%), Positives = 92/169 (54%), Gaps = 2/169 (1%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 254
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 255 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 428
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 429 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVFHTVPIYEGI 575
+ FE + PA Y+ QAV +A+ ++T +++D G P+ +G+
Sbjct: 122 EAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGL 170
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 55.6 bits (128), Expect = 6e-09
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Frame = +3
Query: 276 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 443
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 444 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVFHTVPIYEGIPHFPTPFCVWTLGGRD 623
P +A + ++ LYA G G+V+D G PI +G F T LGGR
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIF-TATQQLPLGGRY 230
Query: 624 LTR 632
+T+
Sbjct: 231 MTQ 233
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 35.1 bits (77), Expect = 0.009
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 4/146 (2%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 269
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 270 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIM 437
++ H G + +W +W N + P ++ +LLT+ + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 438 FETFNTPAMYVAIQAVLSLYASGRTT 515
FE F A A L + G T
Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGSFT 143
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.083
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 336 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 479
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.15
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 135 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 278
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.34
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 232 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 71
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
Score = 27.5 bits (58), Expect = 1.8
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = +1
Query: 436 CSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVS----STPCPFTKGYRTSPRHSAF 603
C+ ++ PP + + P + P VPP S TP T + ST P+T TS +
Sbjct: 393 CTTSTSIPPTGNSTTPVT----PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTS---TPL 445
Query: 604 GLWAVVTSQDLPY 642
TS +PY
Sbjct: 446 ATTNCTTSTSVPY 458
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 29.5 bits (63), Expect = 0.44
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Frame = +1
Query: 439 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSSTPCPFTKGYRTSPR-------HS 597
S +S++ + S+P P +PP S TPA ++ + F + +R SP H+
Sbjct: 267 SIYSSQSQPSPYSRPLLSSVHPNLPPGSQSTPANLNQSGIHFEQDFRDSPNRTNGLEDHT 326
Query: 598 AFGLWAVVTSQD 633
+F L + +TS +
Sbjct: 327 SFKLSSPLTSDE 338
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 27.9 bits (59), Expect = 1.4
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 591 PFCVWTLGGRDLTRP 635
P+CVW+L +D++RP
Sbjct: 447 PYCVWSLFAKDISRP 461
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 235 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 119
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 243 VPHLLHKSPSVPYRPSRPDGGAFPRSRET 157
+ L+ K+PS PY SRP A S T
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPT 334
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 378 LLTEAPLNPKANREKMTQIMFETFN 452
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 117 TYRSHCLLPTRQLLRRTS*ISEI 49
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 272 FEGQDTSFALCLISYIRVLLSHTDHHA 192
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +3
Query: 483 VLSLYASGRTTGIVLDSGDGVFHTVPIY----EGIPHFPTPFCVWTLGGRDLTRP 635
++ L A+G+TT + + T+P E + + F VW +GG+D RP
Sbjct: 22 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKIRP 76
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 392 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 541
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 616 PPKVQTQNGVGKCGIPS*MGTVWKTPSPESSTIPVVRPD 500
P +++ Q V IPS M T W P + +RPD
Sbjct: 23 PAQIRIQKDVTDLEIPSTMSTSWPDPIKLNVLHLEIRPD 61
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 497 RVRSYHRYRAGLRRRCLPHRAHLRR 571
R RS HR+ G RR P+R HL R
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSR 164
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 195 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 281
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,121
Number of Sequences: 5004
Number of extensions: 70195
Number of successful extensions: 233
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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