Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2308
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   2.0  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    25   3.5  
SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces p...    24   8.0  

>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 355 LFYRVGDVLFDGVGNRNFLNDSY 287
           L  +VGD  F  VGN N LN +Y
Sbjct: 38  LIEKVGDETFRWVGNENELNGAY 60


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 355 LFYRVGDVLFDGVGNRNFLNDSY 287
           L  +VGD  F  VGN N LN +Y
Sbjct: 37  LIEKVGDEKFRWVGNTNELNGAY 59


>SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 184

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 406 NKGVGLGNVHFHG 368
           NKG+G+ NVH+ G
Sbjct: 163 NKGIGIENVHYLG 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,033,512
Number of Sequences: 5004
Number of extensions: 12715
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)