Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2308
         (411 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0091 + 13312904-13313647                                         27   7.7  
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699...    27   7.7  

>07_03_0091 + 13312904-13313647
          Length = 247

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 319 PRRKAHPLPGRKENPLPRESARSPTLPP 402
           P  K  P P  K  P P+     P LPP
Sbjct: 208 PNPKPEPQPDPKPEPKPQPEPSQPKLPP 235


>06_01_0906 +
           6990892-6991615,6992480-6992679,6992822-6993002,
           6993855-6994046,6994492-6994724,6995537-6995638,
           6995776-6995826,6996234-6996338,6997287-6997353,
           6997946-6997962
          Length = 623

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 304 SSCSLPRRKAHPLPGRKENPLPRESARSPTLP 399
           +S S P+RK    PGRK  P P  S  +   P
Sbjct: 7   ASTSSPKRKPGRRPGRKPKPPPAPSPAAAPAP 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,798,270
Number of Sequences: 37544
Number of extensions: 116938
Number of successful extensions: 516
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)