Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2308
         (411 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK125322-1|BAC86128.1| 1685|Homo sapiens protein ( Homo sapiens ...    30   3.4  
AJ621424-1|CAF18565.1| 1685|Homo sapiens myomesin 1 protein.           30   3.4  
Z93242-2|CAI42725.1|  530|Homo sapiens retinoic acid induced 2 p...    29   7.9  
BC027937-1|AAH27937.1|  530|Homo sapiens RAI2 protein protein.         29   7.9  
AL162741-3|CAI23245.1|  337|Homo sapiens centaurin, beta 5 protein.    29   7.9  
AL139287-4|CAI23173.1|  337|Homo sapiens centaurin, beta 5 protein.    29   7.9  
AK093954-1|BAC04257.1|  255|Homo sapiens protein ( Homo sapiens ...    29   7.9  
AF136587-1|AAD33688.1|  530|Homo sapiens retinoic acid-induced p...    29   7.9  

>AK125322-1|BAC86128.1| 1685|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43332 fis, clone NT2RI3006340, highly  similar
           to Myomesin 1. ).
          Length = 1685

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 319 PRRKAHPLPGRKENPLPRESARSPTLPPC 405
           P +KA P    K +PL +++ R+P  PPC
Sbjct: 910 PPQKAAPQGKSKSDPLKKKTDRAPPSPPC 938


>AJ621424-1|CAF18565.1| 1685|Homo sapiens myomesin 1 protein.
          Length = 1685

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 319 PRRKAHPLPGRKENPLPRESARSPTLPPC 405
           P +KA P    K +PL +++ R+P  PPC
Sbjct: 910 PPQKAAPQGKSKSDPLKKKTDRAPPSPPC 938


>Z93242-2|CAI42725.1|  530|Homo sapiens retinoic acid induced 2
           protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 335 IPYPVEKKIPYPVKVHVPQPYP 400
           +PYPV   +P PV + +P P P
Sbjct: 232 VPYPVIVPLPVPVPIPIPIPMP 253


>BC027937-1|AAH27937.1|  530|Homo sapiens RAI2 protein protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 335 IPYPVEKKIPYPVKVHVPQPYP 400
           +PYPV   +P PV + +P P P
Sbjct: 232 VPYPVIVPLPVPVPIPIPIPVP 253


>AL162741-3|CAI23245.1|  337|Homo sapiens centaurin, beta 5 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +1

Query: 322 RRKAHPLPGRKENPLPRESARSPTLPP 402
           R  AH  PGR   P P     SP LPP
Sbjct: 292 RLPAHQAPGRPLRPHPMPGTPSPPLPP 318


>AL139287-4|CAI23173.1|  337|Homo sapiens centaurin, beta 5 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +1

Query: 322 RRKAHPLPGRKENPLPRESARSPTLPP 402
           R  AH  PGR   P P     SP LPP
Sbjct: 292 RLPAHQAPGRPLRPHPMPGTPSPPLPP 318


>AK093954-1|BAC04257.1|  255|Homo sapiens protein ( Homo sapiens
           cDNA FLJ36635 fis, clone TRACH2018835, moderately
           similar to Homo sapiens mRNA for centaurin beta2. ).
          Length = 255

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +1

Query: 322 RRKAHPLPGRKENPLPRESARSPTLPP 402
           R  AH  PGR   P P     SP LPP
Sbjct: 210 RLPAHQAPGRPLRPHPMPGTPSPPLPP 236


>AF136587-1|AAD33688.1|  530|Homo sapiens retinoic acid-induced
           protein protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 335 IPYPVEKKIPYPVKVHVPQPYP 400
           +PYPV   +P PV + +P P P
Sbjct: 232 VPYPVIVPLPVPVPIPIPIPVP 253


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,451,836
Number of Sequences: 237096
Number of extensions: 597574
Number of successful extensions: 2367
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2360
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3030544982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)