Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2308
(411 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 29 0.99
U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical pr... 27 4.0
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 27 5.3
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 27 5.3
Z66497-11|CAH19102.1| 238|Caenorhabditis elegans Hypothetical p... 27 7.0
Z66497-10|CAH19101.1| 346|Caenorhabditis elegans Hypothetical p... 27 7.0
Z66497-3|CAE48503.1| 363|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z66497-2|CAD59153.1| 336|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z66497-1|CAA91283.1| 521|Caenorhabditis elegans Hypothetical pr... 27 7.0
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 29.5 bits (63), Expect = 0.99
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 335 IPYPVEKKIPYPVKVHVPQPYP 400
+P PV ++P P++V VP P P
Sbjct: 156 VPVPVPVQVPVPIRVPVPVPVP 177
>U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical
protein F35A5.5 protein.
Length = 125
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 338 PYPVEKKIPYPVKVHVPQPYPL 403
P PV +P PV V +P P P+
Sbjct: 12 PVPVPAPVPQPVPVPMPMPMPM 33
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +2
Query: 335 IPYPVEKKIPYPVKVHVPQPYPL 403
+P PV + +P P+ + +P P P+
Sbjct: 15 VPAPVPQPVPVPMPMPMPMPMPM 37
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 27.1 bits (57), Expect = 5.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 338 PYPVEKKIPYPVKVHVPQPYP 400
P P K +P P+ H P+P+P
Sbjct: 210 PMPFPKPMPKPMPKHKPKPFP 230
Score = 26.2 bits (55), Expect = 9.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 338 PYPVEKKIPYPVKVHVPQPYPLVK 409
P P+ K +P+P + P+P P K
Sbjct: 132 PMPIPKPMPFPKPMLFPKPMPFPK 155
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 307 SCSLPRRKAHPLPGRKENPLPRESARSPTLP 399
S S PRR+ P ++ PR + RSP+ P
Sbjct: 88 SASPPRRRRDDSPRKRSRSPPRRTRRSPSPP 118
>Z66497-11|CAH19102.1| 238|Caenorhabditis elegans Hypothetical
protein K08F8.1e protein.
Length = 238
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 406 NKGVGLGNVHFHGVGDFLFYRVGDVLFDGVGNRNFLNDSYGFVDFLVP 263
++ + L N+ G GD Y++GD F RN L +S F P
Sbjct: 106 HRDIKLENILCSGTGDNCVYKLGDYGFAKRPERNVLMESPCCTPFYAP 153
>Z66497-10|CAH19101.1| 346|Caenorhabditis elegans Hypothetical
protein K08F8.1d protein.
Length = 346
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 406 NKGVGLGNVHFHGVGDFLFYRVGDVLFDGVGNRNFLNDSYGFVDFLVP 263
++ + L N+ G GD Y++GD F RN L +S F P
Sbjct: 214 HRDIKLENILCSGTGDNCVYKLGDYGFAKRPERNVLMESPCCTPFYAP 261
>Z66497-3|CAE48503.1| 363|Caenorhabditis elegans Hypothetical
protein K08F8.1c protein.
Length = 363
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 406 NKGVGLGNVHFHGVGDFLFYRVGDVLFDGVGNRNFLNDSYGFVDFLVP 263
++ + L N+ G GD Y++GD F RN L +S F P
Sbjct: 106 HRDIKLENILCSGTGDNCVYKLGDYGFAKRPERNVLMESPCCTPFYAP 153
>Z66497-2|CAD59153.1| 336|Caenorhabditis elegans Hypothetical
protein K08F8.1b protein.
Length = 336
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 406 NKGVGLGNVHFHGVGDFLFYRVGDVLFDGVGNRNFLNDSYGFVDFLVP 263
++ + L N+ G GD Y++GD F RN L +S F P
Sbjct: 264 HRDIKLENILCSGTGDNCVYKLGDYGFAKRPERNVLMESPCCTPFYAP 311
>Z66497-1|CAA91283.1| 521|Caenorhabditis elegans Hypothetical
protein K08F8.1a protein.
Length = 521
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 406 NKGVGLGNVHFHGVGDFLFYRVGDVLFDGVGNRNFLNDSYGFVDFLVP 263
++ + L N+ G GD Y++GD F RN L +S F P
Sbjct: 264 HRDIKLENILCSGTGDNCVYKLGDYGFAKRPERNVLMESPCCTPFYAP 311
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,996,678
Number of Sequences: 27780
Number of extensions: 80703
Number of successful extensions: 356
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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