Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2308
         (411 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   4.1  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   5.4  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   5.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   9.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.5  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -2

Query: 377 LSRGRGFSFLPGRGCAFRRGREQELS*RQLRFC 279
           L +G G  +LP  GC  + G + ++  ++   C
Sbjct: 233 LCKGDGKWYLPSGGCHCKPGYQADVEKQECTEC 265


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 353 KKIPYPVKVHVPQPY 397
           + + YP+ VHV  PY
Sbjct: 13  RALKYPMVVHVYHPY 27


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 353 KKIPYPVKVHVPQPY 397
           + + YP+ VHV  PY
Sbjct: 13  RALKYPMVVHVYHPY 27


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = +3

Query: 60  WLYWPS 77
           WL+WPS
Sbjct: 221 WLFWPS 226


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 319  PRRKAHPLPGRKENPLPR 372
            P RK  P+PG   N   R
Sbjct: 1649 PNRKLPPVPGSNYNTCDR 1666


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,823
Number of Sequences: 438
Number of extensions: 1421
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)