Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2307
         (473 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    46   3e-04
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    40   0.037
UniRef50_Q95XM5 Cluster: Putative uncharacterized protein; n=2; ...    33   3.2  
UniRef50_UPI00015B553A Cluster: PREDICTED: similar to Vps8 prote...    32   7.4  
UniRef50_A1SC42 Cluster: Phage integrase family protein; n=2; No...    31   9.8  
UniRef50_Q4R9M6 Cluster: Hexose transporter; n=3; Filobasidiella...    31   9.8  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 46.4 bits (105), Expect = 3e-04
 Identities = 23/46 (50%), Positives = 26/46 (56%)
 Frame = +3

Query: 237 KHSPLSFAPDLLSGSRFRSGGRLCEARLLIGFVLATSSGLNPVSSP 374
           K  P+ F       SRFRS GR CEA LL+G VLA S  L+P   P
Sbjct: 71  KTQPMKFLAGSSQSSRFRSDGRFCEALLLLGLVLANSLRLSPYELP 116


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 39.5 bits (88), Expect = 0.037
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +3

Query: 219 SVDIPHKHSPLSFAPDLLSGSRFRSG 296
           S +  H+  PLSF+PDLLSGSRFR+G
Sbjct: 387 STENEHRCCPLSFSPDLLSGSRFRTG 412


>UniRef50_Q95XM5 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 383

 Score = 33.1 bits (72), Expect = 3.2
 Identities = 22/64 (34%), Positives = 33/64 (51%)
 Frame = -1

Query: 275 AEKIRRETQWAVFVGYVDREI*THQIVFPTLRFEGTSSELKVQFRVLIRVFTFRRSK*TA 96
           AEKI++ET W+   G V  +    ++  P     G +SELK QF  L+++      + T 
Sbjct: 202 AEKIQKETNWSP-SGSVKEQGPIEEVFKPIFLVFGANSELKTQFLELLKLEGLVSKESTI 260

Query: 95  T*LQ 84
           T LQ
Sbjct: 261 TNLQ 264


>UniRef50_UPI00015B553A Cluster: PREDICTED: similar to Vps8 protein;
            n=1; Nasonia vitripennis|Rep: PREDICTED: similar to Vps8
            protein - Nasonia vitripennis
          Length = 1208

 Score = 31.9 bits (69), Expect = 7.4
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 357  SNLTMLLTQTLSRAVLRTIYRRIGNATR*EDPARNSMGCVCGVCRQRDLDASNCL 193
            S    +L QT +R V   ++  + ++ R    AR     +C +CR+    A+NCL
Sbjct: 1070 SRYEQVLVQTTARLVSLELHEALKSSLREAGKARTCHSLICPICRRVLSHANNCL 1124


>UniRef50_A1SC42 Cluster: Phage integrase family protein; n=2;
           Nocardioides sp. JS614|Rep: Phage integrase family
           protein - Nocardioides sp. (strain BAA-499 / JS614)
          Length = 797

 Score = 31.5 bits (68), Expect = 9.8
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +2

Query: 155 LIRLMFLRIEALGRQFDASKSLCRHTPQTQPIEFRAGSSQRVAFPIR--R*IVRSTALDR 328
           L+  M  R+E   R  +A  +L + TP      F   + QR++  IR  R +    A D 
Sbjct: 395 LVPRMLARLEQDRRDAEAMLALAKQTPADASFNFNGRTYQRISTRIRGGRGLPPDLAYDV 454

Query: 329 VCVSNIVRF 355
           VCV    RF
Sbjct: 455 VCVETGERF 463


>UniRef50_Q4R9M6 Cluster: Hexose transporter; n=3; Filobasidiella
           neoformans|Rep: Hexose transporter - Cryptococcus
           neoformans var. grubii (Filobasidiella neoformans
           var.grubii)
          Length = 520

 Score = 31.5 bits (68), Expect = 9.8
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 279 SRFRSGGRLCEARLLIGFVLATSSGLNPV 365
           S F + G+LC ARLL G  +  +SGL PV
Sbjct: 105 SAFNTYGQLCVARLLTGLGVGATSGLVPV 133


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 414,986,544
Number of Sequences: 1657284
Number of extensions: 7189869
Number of successful extensions: 13744
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13744
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26450695845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)