Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2307
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457...    27   5.8  
11_06_0694 - 26336742-26336957,26337731-26337950,26338777-26338976     27   7.7  
10_08_0718 + 20091001-20091327,20091426-20091806                       27   7.7  

>12_01_0564 -
           4567650-4568063,4568154-4568624,4568722-4568923,
           4570395-4571104
          Length = 598

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 308 AQSTAGSETRPAEKIRRETQWAVFVG 231
           A S A    R A  +RRE +W VFVG
Sbjct: 126 APSAAPLRARLAAGLRREERWVVFVG 151


>11_06_0694 - 26336742-26336957,26337731-26337950,26338777-26338976
          Length = 211

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 255 FAPDLLSGSRFRSGGRLCEARLLIGFVLATSSG 353
           FAPD L G   RSG  +  ARL      AT+ G
Sbjct: 20  FAPDALLGGSGRSGAGVAAARLAHVLCFATAWG 52


>10_08_0718 + 20091001-20091327,20091426-20091806
          Length = 235

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 285 FRSGGRLCEARLLIGFVLATSSGLNPVSSPT 377
           F +G  LCE+ +++ ++  T +G+ P   PT
Sbjct: 61  FHNGKPLCESMIIVEYIDETFAGVGPSVVPT 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,898,397
Number of Sequences: 37544
Number of extensions: 193180
Number of successful extensions: 349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)