Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2307
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-27|AAK73932.2|  383|Caenorhabditis elegans Hypothetical...    33   0.10 
U29378-5|AAA68725.2|  355|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z99271-2|CAD92401.1|   67|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z99271-1|CAB16471.1|  663|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AC025726-27|AAK73932.2|  383|Caenorhabditis elegans Hypothetical
           protein Y71G12B.6 protein.
          Length = 383

 Score = 33.1 bits (72), Expect = 0.10
 Identities = 22/64 (34%), Positives = 33/64 (51%)
 Frame = -1

Query: 275 AEKIRRETQWAVFVGYVDREI*THQIVFPTLRFEGTSSELKVQFRVLIRVFTFRRSK*TA 96
           AEKI++ET W+   G V  +    ++  P     G +SELK QF  L+++      + T 
Sbjct: 202 AEKIQKETNWSP-SGSVKEQGPIEEVFKPIFLVFGANSELKTQFLELLKLEGLVSKESTI 260

Query: 95  T*LQ 84
           T LQ
Sbjct: 261 TNLQ 264


>U29378-5|AAA68725.2|  355|Caenorhabditis elegans Hypothetical
           protein F08C6.6 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 171 SFESKRWEDNLMRLNLSVDIPHKHSPLSFAPD--LLSGSRFRSGGRLCE 311
           S + K+W+  + R  L V   HKH+ + F  D      +   +GGR  E
Sbjct: 69  SKDGKKWKSLVSRGFLKVSADHKHADIHFDKDSEYYVDTNIAAGGRAME 117


>Z99271-2|CAD92401.1|   67|Caenorhabditis elegans Hypothetical
           protein Y43F4A.1b protein.
          Length = 67

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 168 CSFESKRWEDNLMRLNLSVDIPHKH 242
           CS+++ R ED L+ + +  + PH+H
Sbjct: 26  CSYQNPRIEDILLEVPIEHEHPHRH 50


>Z99271-1|CAB16471.1|  663|Caenorhabditis elegans Hypothetical
           protein Y43F4A.1a protein.
          Length = 663

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 168 CSFESKRWEDNLMRLNLSVDIPHKH 242
           CS+++ R ED L+ + +  + PH+H
Sbjct: 26  CSYQNPRIEDILLEVPIEHEHPHRH 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,493,795
Number of Sequences: 27780
Number of extensions: 168847
Number of successful extensions: 272
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)