Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2306
(428 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 174 4e-45
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 174 6e-45
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 174 6e-45
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 91 5e-20
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 91 9e-20
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 44 8e-06
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 36 0.002
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.003
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.003
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 36 0.003
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 30 0.18
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 29 0.31
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 1.6
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 2.9
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 3.8
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 3.8
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 5.0
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 5.0
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 25 5.0
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 8.7
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 24 8.7
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 174 bits (424), Expect = 4e-45
Identities = 86/114 (75%), Positives = 91/114 (79%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 208
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 209 DKLKAERERGITIDIALWKFETSKSMLPSLMLLDTEISSRT*SQEPFQADCAVL 370
DKLKAERERGITIDIALWKFET K + + + QADCAVL
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVL 114
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 174 bits (423), Expect = 6e-45
Identities = 85/114 (74%), Positives = 91/114 (79%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 208
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 209 DKLKAERERGITIDIALWKFETSKSMLPSLMLLDTEISSRT*SQEPFQADCAVL 370
DKLKAERERGITIDIALWKFET K + + + QADCA+L
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAIL 114
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 174 bits (423), Expect = 6e-45
Identities = 85/114 (74%), Positives = 91/114 (79%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 208
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 209 DKLKAERERGITIDIALWKFETSKSMLPSLMLLDTEISSRT*SQEPFQADCAVL 370
DKLKAERERGITIDIALWKFET K + + + QADCA+L
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAIL 114
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 91.5 bits (217), Expect = 5e-20
Identities = 40/78 (51%), Positives = 56/78 (71%)
Frame = +2
Query: 41 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 220
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 221 AERERGITIDIALWKFET 274
ERE+G T+++ FET
Sbjct: 296 EEREKGKTVEVGRAYFET 313
Score = 26.2 bits (55), Expect = 2.2
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +1
Query: 289 TIIDASGHRDFIKNMITG 342
+++DA GH+ ++ NMI G
Sbjct: 319 SLLDAPGHKGYVTNMING 336
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 90.6 bits (215), Expect = 9e-20
Identities = 39/82 (47%), Positives = 57/82 (69%)
Frame = +2
Query: 41 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 220
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 221 AERERGITIDIALWKFETSKSM 286
ER RG+T+D+A FE+ K +
Sbjct: 235 EERARGVTMDVASTTFESDKKI 256
Score = 28.7 bits (61), Expect = 0.40
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 298 DASGHRDFIKNMITGTFS 351
DA GHRDFI MI G S
Sbjct: 261 DAPGHRDFISGMIAGASS 278
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 44.4 bits (100), Expect = 8e-06
Identities = 30/81 (37%), Positives = 42/81 (51%)
Frame = +2
Query: 35 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 214
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 215 LKAERERGITIDIALWKFETS 277
E+ RGITI A ++ET+
Sbjct: 94 APEEKARGITISSAHVEYETA 114
Score = 30.3 bits (65), Expect = 0.13
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 295 IDASGHRDFIKNMITG 342
+D GH D+IKNMITG
Sbjct: 121 VDCPGHADYIKNMITG 136
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 36.3 bits (80), Expect = 0.002
Identities = 24/68 (35%), Positives = 36/68 (52%)
Frame = +2
Query: 53 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 232
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 233 RGITIDIA 256
+GITI A
Sbjct: 111 KGITIQSA 118
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.9 bits (79), Expect = 0.003
Identities = 28/73 (38%), Positives = 34/73 (46%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 208
MGK N+ VI HVD GKST T L+ K G I A + G F +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGII----------SAAKAGDARF-----M 57
Query: 209 DKLKAERERGITI 247
D E+ERG+TI
Sbjct: 58 DTRADEQERGVTI 70
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.9 bits (79), Expect = 0.003
Identities = 28/73 (38%), Positives = 34/73 (46%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 208
MGK N+ VI HVD GKST T L+ K G I A + G F +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGII----------SAAKAGDARF-----M 57
Query: 209 DKLKAERERGITI 247
D E+ERG+TI
Sbjct: 58 DTRADEQERGVTI 70
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 35.9 bits (79), Expect = 0.003
Identities = 25/72 (34%), Positives = 36/72 (50%)
Frame = +2
Query: 53 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 232
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGD----TVMDYLPAERQ 76
Query: 233 RGITIDIALWKF 268
RGITI+ A F
Sbjct: 77 RGITINSAAISF 88
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 29.9 bits (64), Expect = 0.18
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = -3
Query: 309 SRSINDGNIDLLVSNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLS 130
SRS N S+ Q I IP+ A S+ N++ + +D LP + S V+L
Sbjct: 150 SRSSTPRNSIKSNSSNQGHGDIPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLE 209
Query: 129 IPPH 118
+P H
Sbjct: 210 LPTH 213
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 29.1 bits (62), Expect = 0.31
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +2
Query: 53 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 232
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 233 RGITI 247
RGIT+
Sbjct: 104 RGITV 108
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 1.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 270 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 139
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 2.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 236 HAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWY 138
H+H PL P+P +L P P P S WY
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWY 166
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 3.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 259 LEVRN*QVYVTIIDASGHRDFIKN 330
LE +N + +T+ID G DFI N
Sbjct: 80 LEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 3.8
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 215 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 87
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 5.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 23 PKMGKEKTHINIVVIGHVDSGKST 94
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 5.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 170 PGPPSRTSRWYVCQYHHIC 114
P PP +T + Y QY+ +C
Sbjct: 8 PAPPKKTLQLYTPQYYGLC 26
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 5.0
Identities = 15/66 (22%), Positives = 28/66 (42%)
Frame = -3
Query: 327 LDEISVSRSINDGNIDLLVSNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNF 148
+D + S S N L+ ++ + + + PR+ S+ N A K+P + S F
Sbjct: 175 MDVMCQSMSFNADGTRLVTTSRDKKVRVWDPRTDKPVSVGNGHAGAKNPRVVWLGSLDRF 234
Query: 147 SMVRLS 130
+ S
Sbjct: 235 ATTGFS 240
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 56 IVVIGHVDSGKSTTTGHLIYKC 121
IVV+G SGKST + +C
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 8.7
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 59 VVIGHVDSGKSTTTGHLIYKCG 124
+V+GH GK+T +Y+ G
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAG 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,698,564
Number of Sequences: 5004
Number of extensions: 31683
Number of successful extensions: 124
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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