Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2306
(428 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 181 2e-46
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 181 2e-46
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 181 2e-46
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 181 2e-46
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 1e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 101 2e-22
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 101 2e-22
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 92 2e-19
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 40 0.001
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 37 0.005
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 36 0.009
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 36 0.009
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 36 0.009
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 34 0.038
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.11
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.11
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 31 0.27
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 31 0.27
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.35
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.35
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 1.1
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 1.1
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z82258-1|CAB05122.2| 906|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 26 10.0
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 26 10.0
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 26 10.0
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 181 bits (440), Expect = 2e-46
Identities = 89/114 (78%), Positives = 93/114 (81%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 208
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 209 DKLKAERERGITIDIALWKFETSKSMLPSLMLLDTEISSRT*SQEPFQADCAVL 370
DKLKAERERGITIDIALWKFET+K + + + QADCAVL
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVL 114
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 181 bits (440), Expect = 2e-46
Identities = 89/114 (78%), Positives = 93/114 (81%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 208
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 209 DKLKAERERGITIDIALWKFETSKSMLPSLMLLDTEISSRT*SQEPFQADCAVL 370
DKLKAERERGITIDIALWKFET+K + + + QADCAVL
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVL 114
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 181 bits (440), Expect = 2e-46
Identities = 89/114 (78%), Positives = 93/114 (81%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 208
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 209 DKLKAERERGITIDIALWKFETSKSMLPSLMLLDTEISSRT*SQEPFQADCAVL 370
DKLKAERERGITIDIALWKFET+K + + + QADCAVL
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVL 114
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 181 bits (440), Expect = 2e-46
Identities = 89/114 (78%), Positives = 93/114 (81%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 208
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 209 DKLKAERERGITIDIALWKFETSKSMLPSLMLLDTEISSRT*SQEPFQADCAVL 370
DKLKAERERGITIDIALWKFET+K + + + QADCAVL
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVL 114
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 1e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 208
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 209 DKLKAER 229
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 101 bits (242), Expect = 2e-22
Identities = 45/80 (56%), Positives = 59/80 (73%)
Frame = +2
Query: 38 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 217
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 218 KAERERGITIDIALWKFETS 277
+ ERERG+T+DI FETS
Sbjct: 227 EEERERGVTMDIGRTSFETS 246
Score = 35.9 bits (79), Expect = 0.012
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +1
Query: 286 VTIIDASGHRDFIKNMITGT 345
+ ++DA GH+DFI NMITGT
Sbjct: 250 IVLLDAPGHKDFISNMITGT 269
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 101 bits (242), Expect = 2e-22
Identities = 45/80 (56%), Positives = 59/80 (73%)
Frame = +2
Query: 38 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 217
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 218 KAERERGITIDIALWKFETS 277
+ ERERG+T+DI FETS
Sbjct: 245 EEERERGVTMDIGRTSFETS 264
Score = 35.9 bits (79), Expect = 0.012
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +1
Query: 286 VTIIDASGHRDFIKNMITGT 345
+ ++DA GH+DFI NMITGT
Sbjct: 268 IVLLDAPGHKDFISNMITGT 287
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 91.9 bits (218), Expect = 2e-19
Identities = 40/83 (48%), Positives = 58/83 (69%)
Frame = +2
Query: 32 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 211
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 212 KLKAERERGITIDIALWKFETSK 280
ERE+G T+++ FET K
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEK 186
Score = 30.7 bits (66), Expect = 0.46
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 283 YVTIIDASGHRDFIKNMITG 342
+ TI+DA GH+ F+ NMI G
Sbjct: 188 HFTILDAPGHKSFVPNMIVG 207
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 39.5 bits (88), Expect = 0.001
Identities = 29/68 (42%), Positives = 35/68 (51%)
Frame = +2
Query: 53 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 232
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI---------HVAGHVDKGN----TVTDFLDIERE 73
Query: 233 RGITIDIA 256
RGIT+ A
Sbjct: 74 RGITVQSA 81
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 37.1 bits (82), Expect = 0.005
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +2
Query: 53 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 232
NI + H+DSGK+T T ++Y G ID + +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID----------SMHEVRGKDDVGATMDFMDLERQ 95
Query: 233 RGITIDIA 256
RGITI A
Sbjct: 96 RGITIQSA 103
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 36.3 bits (80), Expect = 0.009
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 35 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 205
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 206 LDKLKAER 229
L+ A+R
Sbjct: 105 LEYETAKR 112
Score = 30.7 bits (66), Expect = 0.46
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +1
Query: 295 IDASGHRDFIKNMITG 342
ID GH D+IKNMITG
Sbjct: 117 IDCPGHADYIKNMITG 132
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 36.3 bits (80), Expect = 0.009
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 35 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 205
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 206 LDKLKAER 229
L+ A+R
Sbjct: 106 LEYETAKR 113
Score = 30.7 bits (66), Expect = 0.46
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +1
Query: 295 IDASGHRDFIKNMITG 342
ID GH D+IKNMITG
Sbjct: 118 IDCPGHADYIKNMITG 133
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 36.3 bits (80), Expect = 0.009
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 35 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 205
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 206 LDKLKAER 229
L+ A+R
Sbjct: 106 LEYETAKR 113
Score = 30.7 bits (66), Expect = 0.46
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +1
Query: 295 IDASGHRDFIKNMITG 342
ID GH D+IKNMITG
Sbjct: 118 IDCPGHADYIKNMITG 133
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 34.3 bits (75), Expect = 0.038
Identities = 23/65 (35%), Positives = 32/65 (49%)
Frame = +2
Query: 53 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 232
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 233 RGITI 247
RGIT+
Sbjct: 86 RGITV 90
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.11
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 124
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.11
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 124
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 31.5 bits (68), Expect = 0.27
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = +2
Query: 41 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 214
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 215 LKAERERGITIDIALWKFET 274
K E++RGITI++A +E+
Sbjct: 86 GKEEKKRGITINVAHIGYES 105
Score = 29.9 bits (64), Expect = 0.81
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1
Query: 298 DASGHRDFIKNMITGT 345
D GH DFIKNMI GT
Sbjct: 114 DCPGHSDFIKNMICGT 129
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 31.5 bits (68), Expect = 0.27
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = +2
Query: 41 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 214
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 215 LKAERERGITIDIALWKFET 274
K E++RGITI++A +E+
Sbjct: 86 GKEEKKRGITINVAHIGYES 105
Score = 29.9 bits (64), Expect = 0.81
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1
Query: 298 DASGHRDFIKNMITGT 345
D GH DFIKNMI GT
Sbjct: 114 DCPGHSDFIKNMICGT 129
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.35
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 5 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 115
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.35
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 5 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 115
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 131 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 232
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 131 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 232
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 50 INIVVIGHVDSGKSTTT 100
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 50 INIVVIGHVDSGKSTTT 100
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z82258-1|CAB05122.2| 906|Caenorhabditis elegans Hypothetical
protein C27H2.2a protein.
Length = 906
Score = 27.5 bits (58), Expect = 4.3
Identities = 22/68 (32%), Positives = 36/68 (52%)
Frame = +2
Query: 188 FKYAWVLDKLKAERERGITIDIALWKFETSKSMLPSLMLLDTEISSRT*SQEPFQADCAV 367
+K + +L +L+ E +T+D L + S LP++ + TEI + QE + + C
Sbjct: 641 YKTSEMLKRLEVET---VTLDDLL-RIAKSAPALPNISNVLTEIEACPEVQEIWLSTCYP 696
Query: 368 LNRSLPVP 391
LN SL VP
Sbjct: 697 LNSSLIVP 704
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Frame = +1
Query: 286 VTIIDASGHRDFI--KNMITGT 345
V IID+SG RDFI KN+ GT
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT 94
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 26.2 bits (55), Expect = 10.0
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 23 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 181
PK +EK I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 26.2 bits (55), Expect = 10.0
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 23 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 181
PK +EK I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
F45E4.4 protein.
Length = 2361
Score = 26.2 bits (55), Expect = 10.0
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +2
Query: 53 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 232
+I+ GH+D S GH +K GI E FE E ++ + + + ERE
Sbjct: 1633 SIIPSGHIDQPISLPRGHTGFKPAGIVNED-ELFETERKQREESPTRESGYATSTSYERE 1691
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 26.2 bits (55), Expect = 10.0
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 23 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 181
PK +EK I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,542,977
Number of Sequences: 27780
Number of extensions: 183923
Number of successful extensions: 556
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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