Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2304
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    29   0.42 
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.55 
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    28   0.96 
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    28   1.3  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   1.7  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   1.7  
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    26   3.9  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   5.1  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    25   6.8  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    25   6.8  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   9.0  

>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 228 IPSSPSCYHQPTVPIHITEPSLR-LSLSISCQSKFIAPPSYQIYIL 94
           + +SP   H P+ PI    PS++ LS  +  Q + +A  ++Q+ I+
Sbjct: 313 VTNSPVDTHTPSTPIMSRPPSMKALSSGVESQDESVASSNFQVPII 358


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 245 NKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSSHHQ-ATKSIYYFSYKMHTG 69
           N + + Y H  H  ISP   ++S+  V++SP     SR S  H   T + Y  S   +  
Sbjct: 474 NSSFSPYYHKRHRQISPYYPTSSVYGVYESPPHMSDSRISRQHMPLTHTTYEPSAPYYND 533

Query: 68  Y 66
           Y
Sbjct: 534 Y 534


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -1

Query: 245 NKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSSHHQATKSIYYFSY 84
           N T+ V+ +    + +P++ +TS +  F S YP  +S SSS + A+ +    SY
Sbjct: 120 NVTAPVWSNTSVPVSTPETSATSSSEFFTS-YPATSSESSSSYPASSTEVASSY 172


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 543 KDSI*HFQSLINQQTPFQERPFFEDKF 623
           KDS+ HF + + QQ PF +R    DKF
Sbjct: 160 KDSVGHFLADMKQQIPFLKRILDMDKF 186


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -1

Query: 239 TSNVYRHHHHVIISPQSQSTS----LNPVFDSPYPFLASRSS 126
           T N+ R H  V+++PQ+ STS    + P   +PY   A  S+
Sbjct: 295 TDNIIRSHSPVLLTPQTLSTSETKHIRPNNSTPYQRRAETST 336


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = -2

Query: 409 ILNFKKNENVIIHILKIIC*RA*KISLKSIMLFITN*SNLFNIYASLIKEEGAL*IKH 236
           ++  K  E +  ++    C R  K+ LK ++ F+     + + Y   + + GAL +KH
Sbjct: 800 VIGIKSFEKLQSYVFTYYCERYPKLILKRVLRFLEEIGFITSQYPRKLTDTGALFLKH 857


>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = -1

Query: 281 LCKFNQRRRSVINKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSSHHQATKS 102
           L   N    S++ +T  V + HH  ++  QSQS S   V    + +   R+   H    +
Sbjct: 233 LILMNNLATSLLAQTETVDKKHHETLM-KQSQSWSQKAVDSYYFAYPKDRNQECHAGCAA 291

Query: 101 IYY 93
            +Y
Sbjct: 292 AFY 294


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 236 SNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSSHHQATKS 102
           SNV  +H HV    +S S +   VFD+  P     S +H+  T S
Sbjct: 331 SNVKNNHSHVGSQTKSHSFATPSVFDNNKPV---SSDNHNNTTTS 372


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 200 SPQSQSTSLNPVFDSPYPFLASRSSSHHQATKSIY 96
           S Q  + SLN + + PY  + SR    H+A K  Y
Sbjct: 355 SSQRSNVSLNSLIECPYKSMMSRKRP-HEAGKDSY 388


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 155 PYPFLASRSSSHHQATKSIYYFSYKMHTGY 66
           P PF  +RSS+   A  S +Y +Y +   Y
Sbjct: 349 PPPFFKNRSSAALLACSSFFYLNYMLFAYY 378


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 191 SQSTSLNPVFDSPYPFLASRSSSHH 117
           S S    P F  PYP  A   +S+H
Sbjct: 425 SHSPQTQPPFQPPYPSKADEKNSYH 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,028
Number of Sequences: 5004
Number of extensions: 57028
Number of successful extensions: 134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)