Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2304
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68752-2|CAE54904.1|  912|Caenorhabditis elegans Hypothetical pr...    37   0.010
Z68752-3|CAE54905.1|  888|Caenorhabditis elegans Hypothetical pr...    32   0.39 
Z68752-1|CAA92981.1|  928|Caenorhabditis elegans Hypothetical pr...    32   0.39 
AF022976-8|AAC69087.2|  366|Caenorhabditis elegans Serpentine re...    28   4.8  
AC024839-8|AAF60825.1|  383|Caenorhabditis elegans Hypothetical ...    28   6.3  
AC024839-7|AAF60827.1|  383|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z82075-3|CAB04929.2|  784|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U13643-5|AAA21081.1|   89|Caenorhabditis elegans Hypothetical pr...    27   8.3  
L15347-1|AAA28142.1|  813|Caenorhabditis elegans raf proto-oncog...    27   8.3  
AY493414-1|AAR86713.1|  769|Caenorhabditis elegans LIN-45 isofor...    27   8.3  
AY493413-1|AAR86712.1|  813|Caenorhabditis elegans LIN-45 isofor...    27   8.3  
AY455928-1|AAR26307.1|  813|Caenorhabditis elegans LIN-45 protein.     27   8.3  
AF293972-1|AAG02478.1|  784|Caenorhabditis elegans auxilin protein.    27   8.3  
AC024204-7|AAM97982.1|  614|Caenorhabditis elegans Abnormal cell...    27   8.3  
AC024204-6|AAF36042.1|  813|Caenorhabditis elegans Abnormal cell...    27   8.3  

>Z68752-2|CAE54904.1|  912|Caenorhabditis elegans Hypothetical
           protein T12G3.2b protein.
          Length = 912

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -1

Query: 269 NQRRRSVINKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSSHH 117
           +Q +   I KTS++Y   HH+ ++P   + ++ P   SP P    RS S H
Sbjct: 811 DQYQPGPIRKTSSIYDSSHHIPLAPAPIARNMGPTMISPPPAKLVRSDSDH 861


>Z68752-3|CAE54905.1|  888|Caenorhabditis elegans Hypothetical
           protein T12G3.2c protein.
          Length = 888

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 269 NQRRRSVINKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYP 147
           +Q +   I KTS++Y   HH+ ++P   + ++ P   SP P
Sbjct: 811 DQYQPGPIRKTSSIYDSSHHIPLAPAPIARNMGPTMISPPP 851


>Z68752-1|CAA92981.1|  928|Caenorhabditis elegans Hypothetical
           protein T12G3.2a protein.
          Length = 928

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 269 NQRRRSVINKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYP 147
           +Q +   I KTS++Y   HH+ ++P   + ++ P   SP P
Sbjct: 811 DQYQPGPIRKTSSIYDSSHHIPLAPAPIARNMGPTMISPPP 851


>AF022976-8|AAC69087.2|  366|Caenorhabditis elegans Serpentine
           receptor, class w protein107 protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +1

Query: 52  IVNV*YPVCIL---YEK*YIDLVAWWCDE 129
           +V++ YP CI    Y K Y D+++WW  +
Sbjct: 81  LVDLEYPECITSDSYLKMYFDIISWWLQD 109


>AC024839-8|AAF60825.1|  383|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.8 protein.
          Length = 383

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 263 RRRSVINKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPF 144
           R R +   T+  YR+    I + Q QSTS+  V+ SPY F
Sbjct: 254 RARELNTSTNPNYRN----IFNNQKQSTSMGRVYQSPYHF 289


>AC024839-7|AAF60827.1|  383|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.2 protein.
          Length = 383

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 263 RRRSVINKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPF 144
           R R +   T+  YR+    I + Q QSTS+  V+ SPY F
Sbjct: 254 RARELNTSTNPNYRN----IFNNQKQSTSMGRVYQSPYHF 289


>Z82075-3|CAB04929.2|  784|Caenorhabditis elegans Hypothetical
           protein W07A8.3 protein.
          Length = 784

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = -1

Query: 383 RNNTYIENYLLTSLKNKFKINNVIYNQLIQSL*YLCKFNQRRRSV 249
           R  + +  ++  SL N+F    V Y+  ++   ++CK++ RR+ +
Sbjct: 182 RTISRVSEFMSDSLPNRFDRLPVTYHLFLEQTKHVCKYHARRQQL 226


>U13643-5|AAA21081.1|   89|Caenorhabditis elegans Hypothetical
           protein T07E3.2 protein.
          Length = 89

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +3

Query: 357 IIFNICIITFSFFL 398
           IIFN CIITFS +L
Sbjct: 8   IIFNFCIITFSVYL 21


>L15347-1|AAA28142.1|  813|Caenorhabditis elegans raf proto-oncogene
           protein.
          Length = 813

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -1

Query: 248 INKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSS 123
           I +T  V RH   + +SPQ++++ L+P    PYP    RSSS
Sbjct: 277 IKRTGGVKRHP--MAVSPQNETSQLSP--SGPYP--RDRSSS 312


>AY493414-1|AAR86713.1|  769|Caenorhabditis elegans LIN-45 isoform 3
           protein.
          Length = 769

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -1

Query: 248 INKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSS 123
           I +T  V RH   + +SPQ++++ L+P    PYP    RSSS
Sbjct: 233 IKRTGGVKRHP--MAVSPQNETSQLSP--SGPYP--RDRSSS 268


>AY493413-1|AAR86712.1|  813|Caenorhabditis elegans LIN-45 isoform 2
           protein.
          Length = 813

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -1

Query: 248 INKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSS 123
           I +T  V RH   + +SPQ++++ L+P    PYP    RSSS
Sbjct: 277 IKRTGGVKRHP--MAVSPQNETSQLSP--SGPYP--RDRSSS 312


>AY455928-1|AAR26307.1|  813|Caenorhabditis elegans LIN-45 protein.
          Length = 813

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -1

Query: 248 INKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSS 123
           I +T  V RH   + +SPQ++++ L+P    PYP    RSSS
Sbjct: 277 IKRTGGVKRHP--MAVSPQNETSQLSP--SGPYP--RDRSSS 312


>AF293972-1|AAG02478.1|  784|Caenorhabditis elegans auxilin protein.
          Length = 784

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = -1

Query: 383 RNNTYIENYLLTSLKNKFKINNVIYNQLIQSL*YLCKFNQRRRSV 249
           R  + +  ++  SL N+F    V Y+  ++   ++CK++ RR+ +
Sbjct: 182 RTISRVSEFMSDSLPNRFDRLPVTYHLFLEQTKHVCKYHARRQQL 226


>AC024204-7|AAM97982.1|  614|Caenorhabditis elegans Abnormal cell
           lineage protein 45,isoform b protein.
          Length = 614

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -1

Query: 248 INKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSS 123
           I +T  V RH   + +SPQ++++ L+P    PYP    RSSS
Sbjct: 319 IKRTGGVKRHP--MAVSPQNETSQLSP--SGPYP--RDRSSS 354


>AC024204-6|AAF36042.1|  813|Caenorhabditis elegans Abnormal cell
           lineage protein 45,isoform a protein.
          Length = 813

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -1

Query: 248 INKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSS 123
           I +T  V RH   + +SPQ++++ L+P    PYP    RSSS
Sbjct: 277 IKRTGGVKRHP--MAVSPQNETSQLSP--SGPYP--RDRSSS 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,143,390
Number of Sequences: 27780
Number of extensions: 298349
Number of successful extensions: 777
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)