Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2304
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.8  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   9.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   9.8  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   9.8  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   9.8  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   9.8  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   9.8  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   9.8  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   9.8  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   9.8  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   9.8  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   9.8  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   9.8  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   9.8  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   9.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.8  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = -1

Query: 272 FNQRRRSVINKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSSHHQATKSIYY 93
           F   +R VI K ++       V I+   + +  + V +    + AS + SH + +  + Y
Sbjct: 151 FGYTKRDVIYKWNSA----RQVAIAEDMKLSQFDLVANPTANYSASTTLSHAEYSMLLVY 206

Query: 92  FSYKMHTG 69
           F  + H G
Sbjct: 207 FHLQRHMG 214


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/27 (22%), Positives = 14/27 (51%)
 Frame = -3

Query: 225 PSSPSCYHQPTVPIHITEPSLRLSLSI 145
           P  P    +PT P H+++    +++ +
Sbjct: 250 PPKPQTKTKPTSPYHVSDHKAAITVGV 276


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 98  YYFSYKMH 75
           YY SYKMH
Sbjct: 428 YYHSYKMH 435


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 98  YYFSYKMH 75
           YY SYKMH
Sbjct: 428 YYHSYKMH 435


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 341 LSSLTNNFQYMYY 379
           +SSL+NN++Y  Y
Sbjct: 82  ISSLSNNYKYSNY 94


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 341 LSSLTNNFQYMYY 379
           +SSL+NN++Y  Y
Sbjct: 82  ISSLSNNYKYSNY 94


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 341 LSSLTNNFQYMYY 379
           +SSL+NN++Y  Y
Sbjct: 82  ISSLSNNYKYSNY 94


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 341 LSSLTNNFQYMYY 379
           +SSL+NN++Y  Y
Sbjct: 82  ISSLSNNYKYSNY 94


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 341 LSSLTNNFQYMYY 379
           +SSL+NN++Y  Y
Sbjct: 82  ISSLSNNYKYSNY 94


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 341 LSSLTNNFQYMYY 379
           +SSL+NN++Y  Y
Sbjct: 82  ISSLSNNYKYSNY 94


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 341 LSSLTNNFQYMYY 379
           +SSL+NN++Y  Y
Sbjct: 82  ISSLSNNYKYSNY 94


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 341 LSSLTNNFQYMYY 379
           +SSL+NN++Y  Y
Sbjct: 82  ISSLSNNYKYSNY 94


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 341 LSSLTNNFQYMYY 379
           +SSL+NN++Y  Y
Sbjct: 82  ISSLSNNYKYSNY 94


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 341 LSSLTNNFQYMYY 379
           +SSL+NN++Y  Y
Sbjct: 82  ISSLSNNYKYSNY 94


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 341 LSSLTNNFQYMYY 379
           +SSL+NN++Y  Y
Sbjct: 82  ISSLSNNYKYSNY 94


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 341 LSSLTNNFQYMYY 379
           +SSL+NN++Y  Y
Sbjct: 82  ISSLSNNYKYSNY 94


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 341 LSSLTNNFQYMYY 379
           +SSL+NN++Y  Y
Sbjct: 82  ISSLSNNYKYSNY 94


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 341 LSSLTNNFQYMYY 379
           +SSL+NN++Y  Y
Sbjct: 82  ISSLSNNYKYSNY 94


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 341 LSSLTNNFQYMYY 379
           +SSL+NN++Y  Y
Sbjct: 315 ISSLSNNYKYSNY 327


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 341 LSSLTNNFQYMYY 379
           +SSL+NN++Y  Y
Sbjct: 315 ISSLSNNYKYSNY 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,004
Number of Sequences: 438
Number of extensions: 3967
Number of successful extensions: 36
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)