Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2303
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    28   0.69 
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    27   1.6  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   4.8  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   6.4  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    25   8.4  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    25   8.4  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   8.4  

>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -3

Query: 276 VLCEPGSLFNDSFMLKINNIIDCFRMPMPRNKERKI 169
           +L +PG    D  M+++NN ++ ++     N+ +KI
Sbjct: 324 ILSKPGKADGDVVMVRVNNDVEAYQWSQKENEWKKI 359


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +3

Query: 84  YWFLPPS*WNYHFLSLIMLTSYRLFCVFKFFFPYFLALAS 203
           YWF   S   +  LS   L+  R F  F F FPYF+ L S
Sbjct: 47  YWF---SSGPFISLSFWFLSLVRGFVCFFFMFPYFVMLKS 83


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 285 VHCVLCEPGSLFNDSFMLKINNIIDCFRM 199
           VHC + + G LFN   +  I   ID F++
Sbjct: 70  VHCEVMKTGMLFNQQILKVIVESIDRFKI 98


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 98  RQKPVKFPRL-HCDVTLKRVHGDNISLERI 12
           +++PV+ P + HC  TL+  H D  SL ++
Sbjct: 595 KRRPVEDPEVRHCSQTLRHWHDDIYSLVQL 624


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 196 WHPKTINNIIDFQHKTII 249
           WHPK+  ++  F+H  I+
Sbjct: 281 WHPKSTKSLAVFRHNEIV 298


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 77  GILLVFAAILMELPFSIINN 136
           GILLVF  I +E    I+NN
Sbjct: 294 GILLVFLGISLEAGLKILNN 313


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 157 FVFSNFSFLISWHWHPKTINNII-DFQHKTIIEQ 255
           F+FS+   L  W + P T+ NII  F+++   EQ
Sbjct: 257 FIFSHNLVLQLWKYAPTTLLNIIPQFENELQAEQ 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,962
Number of Sequences: 5004
Number of extensions: 35273
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)