Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2303
(500 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006610-7|AAK85451.1| 392|Caenorhabditis elegans Hypothetical ... 29 1.4
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z47808-12|CAB61003.1| 902|Caenorhabditis elegans Hypothetical p... 27 7.6
Z47808-11|CAD36487.1| 928|Caenorhabditis elegans Hypothetical p... 27 7.6
Z35595-13|CAA84639.2| 902|Caenorhabditis elegans Hypothetical p... 27 7.6
Z35595-12|CAD36478.1| 928|Caenorhabditis elegans Hypothetical p... 27 7.6
AJ132947-1|CAC29085.1| 902|Caenorhabditis elegans receptor tyro... 27 7.6
AJ132946-1|CAC29084.1| 928|Caenorhabditis elegans receptor tyro... 27 7.6
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p... 27 7.6
>AC006610-7|AAK85451.1| 392|Caenorhabditis elegans Hypothetical
protein C30F12.5 protein.
Length = 392
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -1
Query: 263 LVHCSMIVLC*KSIILLIVLG---CQCQEIRKEKFENTK 156
L+ ++VLC SI+L ++ C C++ +KEK+E TK
Sbjct: 201 LIVAVLLVLCLVSILLSMICAKCFCCCRKNKKEKYEVTK 239
>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
F18C12.2b protein.
Length = 2271
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 358 ERVTRVSTLNRLTNLFTLVSE*EKCSARVL 447
E VT ++T N T LFTL+ + K ARVL
Sbjct: 1831 ECVTDLATCNVTTTLFTLLRDQPKMIARVL 1860
>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
F18C12.2a protein.
Length = 2279
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 358 ERVTRVSTLNRLTNLFTLVSE*EKCSARVL 447
E VT ++T N T LFTL+ + K ARVL
Sbjct: 1839 ECVTDLATCNVTTTLFTLLRDQPKMIARVL 1868
>Z47808-12|CAB61003.1| 902|Caenorhabditis elegans Hypothetical
protein C01G6.8b protein.
Length = 902
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = -3
Query: 279 CVLCEPGSLFNDSFMLKINNIIDCFRMPMPRNKERKI*KHKKDDMMSALLMIENG 115
C++ P + N + +L++NN+ D ++ + KH D M++ G
Sbjct: 84 CIVSNPAASVNTTSVLRVNNVPDAVKLSQKKGSHHST-KHIAFDEYEDYEMMDRG 137
>Z47808-11|CAD36487.1| 928|Caenorhabditis elegans Hypothetical
protein C01G6.8a protein.
Length = 928
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = -3
Query: 279 CVLCEPGSLFNDSFMLKINNIIDCFRMPMPRNKERKI*KHKKDDMMSALLMIENG 115
C++ P + N + +L++NN+ D ++ + KH D M++ G
Sbjct: 110 CIVSNPAASVNTTSVLRVNNVPDAVKLSQKKGSHHST-KHIAFDEYEDYEMMDRG 163
>Z35595-13|CAA84639.2| 902|Caenorhabditis elegans Hypothetical
protein C01G6.8b protein.
Length = 902
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = -3
Query: 279 CVLCEPGSLFNDSFMLKINNIIDCFRMPMPRNKERKI*KHKKDDMMSALLMIENG 115
C++ P + N + +L++NN+ D ++ + KH D M++ G
Sbjct: 84 CIVSNPAASVNTTSVLRVNNVPDAVKLSQKKGSHHST-KHIAFDEYEDYEMMDRG 137
>Z35595-12|CAD36478.1| 928|Caenorhabditis elegans Hypothetical
protein C01G6.8a protein.
Length = 928
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = -3
Query: 279 CVLCEPGSLFNDSFMLKINNIIDCFRMPMPRNKERKI*KHKKDDMMSALLMIENG 115
C++ P + N + +L++NN+ D ++ + KH D M++ G
Sbjct: 110 CIVSNPAASVNTTSVLRVNNVPDAVKLSQKKGSHHST-KHIAFDEYEDYEMMDRG 163
>AJ132947-1|CAC29085.1| 902|Caenorhabditis elegans receptor
tyrosine kinase protein.
Length = 902
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = -3
Query: 279 CVLCEPGSLFNDSFMLKINNIIDCFRMPMPRNKERKI*KHKKDDMMSALLMIENG 115
C++ P + N + +L++NN+ D ++ + KH D M++ G
Sbjct: 84 CIVSNPAASVNTTSVLRVNNVPDAVKLSQKKGSHHST-KHIAFDEYEDYEMMDRG 137
>AJ132946-1|CAC29084.1| 928|Caenorhabditis elegans receptor
tyrosine kinase protein.
Length = 928
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = -3
Query: 279 CVLCEPGSLFNDSFMLKINNIIDCFRMPMPRNKERKI*KHKKDDMMSALLMIENG 115
C++ P + N + +L++NN+ D ++ + KH D M++ G
Sbjct: 110 CIVSNPAASVNTTSVLRVNNVPDAVKLSQKKGSHHST-KHIAFDEYEDYEMMDRG 163
>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
protein RME-8 protein.
Length = 2279
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 358 ERVTRVSTLNRLTNLFTLVSE*EKCSARVL 447
E VT ++T N T LFTL+ + K ARVL
Sbjct: 1839 ECVTDLATCNVTTTLFTLLRDQPKMIARVL 1868
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,917,353
Number of Sequences: 27780
Number of extensions: 200421
Number of successful extensions: 427
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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