Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2302
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    27   0.53 
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   1.6  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   2.8  
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    24   5.0  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    23   8.7  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    23   8.7  

>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 243 DLYVSYAFFVHVLHLRVANGTYSYASFSLLPSYVFLNPFL 124
           DL   +A FV  L  RV    +      LL S+VF+ P++
Sbjct: 107 DLRKEHAHFVGALDERVITSNWGQFPLLLLSSFVFILPYM 146


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 7/19 (36%), Positives = 17/19 (89%)
 Frame = -1

Query: 105 ITKLWVQNKNYKILKNRIL 49
           +++LW++N ++K+L +R+L
Sbjct: 591 VSELWIKNSDWKMLGSRVL 609


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 258  SALACDLYVSYAFFVHVLHLRVAN 187
            S + C +Y+S + F ++LH  V N
Sbjct: 2005 SYIVCSVYISASLFWYILHSLVPN 2028


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -1

Query: 189 NGTYSYASFSLLPSYVFLNPFLFLK*SFITKLWVQNKNYKILKNRILDKCSVCF 28
           NGT   +    L  YVFL   +F K SF +      +  + L ++I+ +  +CF
Sbjct: 214 NGTGVISRAKFLEFYVFLEQLIFNKLSFASV-----EQLEKLLDQIVKRMKICF 262


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +1

Query: 118 KKQEWVQKNIRRKQRKRSIRVGPVRHSKVKNVNEKGIGNIKIASESAPLTFKK 276
           ++Q      I +K++K+       + +K KN+    +G   + S   P++FK+
Sbjct: 425 EEQSQSDYEIDKKKKKKKKNNKKKKKNKRKNIKPGPLGPAYVPSLFTPISFKQ 477


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 181 GPVRHSKVKNVNEKGIGNIKIASESAPLTFKKCLSTRIS 297
           G + H KV  +N  G+G  +   ++  +T    L+ +IS
Sbjct: 126 GEIIHGKVSKINHDGLGFYQGIPQNISVTRYHSLAGKIS 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 965,373
Number of Sequences: 5004
Number of extensions: 15295
Number of successful extensions: 54
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)