Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2302
(321 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0879 + 23960084-23961551,23961796-23962184 28 1.9
03_06_0325 + 33146715-33148601 28 1.9
09_04_0257 + 16170914-16171113,16171362-16171554,16171929-161720... 27 3.3
02_05_0713 + 31159574-31160764 27 3.3
04_04_0059 + 22418795-22418908,22419064-22419202,22419437-224195... 27 4.3
01_07_0115 - 41164227-41164452,41164515-41164601,41164757-41165313 27 4.3
06_03_0416 + 20568087-20568702,20568767-20570313 26 5.7
06_01_0757 + 5659081-5659605,5659694-5659919,5659994-5660333,566... 26 5.7
03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,305... 26 5.7
01_01_0998 - 7894254-7894515,7895133-7895270,7896049-7896246,789... 26 5.7
>12_02_0879 + 23960084-23961551,23961796-23962184
Length = 618
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 133 VQKNIRRKQRKRSIRVGPVRHSKVKNVNEKGIGNIKI 243
V KN R Q+K ++ PV+ S+ N++ K + +IK+
Sbjct: 399 VAKNARVWQKKEEEKISPVKLSRSINLSSKSLLSIKM 435
>03_06_0325 + 33146715-33148601
Length = 628
Score = 27.9 bits (59), Expect = 1.9
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = -1
Query: 312 SRHPSADASRQALLERQGSALACDLYVSYAFFVHVLHLRVANGTYSYASFSLLPSYVFLN 133
SR AD +A A C LY+S A ++L + V +++ + + S L
Sbjct: 223 SRRRRADGELEASAATSNDAFFCFLYISIALATYLLTMIVVQNQTNFSHTAYVVSATALL 282
Query: 132 PFLFL 118
LFL
Sbjct: 283 LVLFL 287
>09_04_0257 +
16170914-16171113,16171362-16171554,16171929-16172034,
16172293-16172415,16172739-16172830,16173276-16173376,
16173458-16173524,16174016-16174108,16174247-16174375
Length = 367
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 261 GSALACDLYVSYAFFVHVLHLRVANGTYSYASFSLLPSY 145
GS +AC + +++ FF + HL + Y+ S +LP Y
Sbjct: 44 GSFMACRVVLNF-FFFFLFHLSNSLKLYNLLSLKILPIY 81
>02_05_0713 + 31159574-31160764
Length = 396
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 136 QKNIRRKQRKRSIRVGPVRHSKVKNVNEKGIGNI 237
+K + +Q RV PVR K KNV G+G +
Sbjct: 234 KKPMDEEQTVTEKRVFPVRLGKFKNVGNTGVGGV 267
>04_04_0059 +
22418795-22418908,22419064-22419202,22419437-22419525,
22420428-22420690,22420793-22420883,22420966-22421325
Length = 351
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 90 VQNKNYKIL-KNRILDKCSVCFNNHRQLLL 4
V+NK +IL N I D S C+ NH +LL
Sbjct: 246 VRNKAAEILFANIIADDVSECYKNHHPMLL 275
>01_07_0115 - 41164227-41164452,41164515-41164601,41164757-41165313
Length = 289
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 303 PSADASRQALLERQGSALACDL 238
PSADA +ER+G+ALA L
Sbjct: 40 PSADAKTDEEVEREGAALAASL 61
>06_03_0416 + 20568087-20568702,20568767-20570313
Length = 720
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 261 GSALACDLYVSYAFFVHV 208
GSA +CD Y+ FFV+V
Sbjct: 62 GSATSCDAYIFSIFFVYV 79
>06_01_0757 +
5659081-5659605,5659694-5659919,5659994-5660333,
5660677-5661025,5661121-5661723
Length = 680
Score = 26.2 bits (55), Expect = 5.7
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = +1
Query: 130 WVQKNIRRKQRKRSIRVGPVRHSKVKNVNE 219
W++ RR+ ++ ++ GP+ H V +E
Sbjct: 29 WLRNKYRRRSSRKGVKYGPLVHRDVWRTSE 58
>03_01_0392 +
3051469-3051876,3052414-3052832,3053992-3054061,
3054923-3055016,3056587-3056907,3057298-3057403,
3058807-3058887,3059336-3059402,3059715-3060239,
3060328-3060553,3060628-3060967,3061311-3061659,
3061755-3062357
Length = 1202
Score = 26.2 bits (55), Expect = 5.7
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = +1
Query: 130 WVQKNIRRKQRKRSIRVGPVRHSKVKNVNE 219
W++ RR+ ++ ++ GP+ H V +E
Sbjct: 551 WLRNKYRRRSSRKGVKYGPLVHRDVWRTSE 580
>01_01_0998 -
7894254-7894515,7895133-7895270,7896049-7896246,
7896334-7896786,7896877-7897098,7898100-7898227,
7899325-7899432
Length = 502
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 136 QKNIRRKQRKRSIRVGPVRHSKVKNVNEKGIGNIKIASESAPLTFKK 276
+K RR +++S+ P H K K+ N + ++K A S FK+
Sbjct: 253 RKGARRNNKRKSLSKRPEDHDKNKSTNLRPYLSLKSAFFSLCTAFKQ 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,467,440
Number of Sequences: 37544
Number of extensions: 77976
Number of successful extensions: 273
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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