Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2302
         (321 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31774| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.36 
SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)       30   0.36 
SB_38478| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15)           26   5.9  
SB_4412| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.9  

>SB_31774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 91  P*FCYKRLFKKQEWVQKNIRRKQRKRSIRVGPVRH 195
           P F YK  FKKQ W  K +RR+Q +   R     H
Sbjct: 374 PSFVYKETFKKQ-WFSKTVRRRQVENLARTDSDDH 407


>SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)
          Length = 1225

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 106 KRLFKKQEW-VQKNIRRKQRKRSIRVGPVRHSKVKNVNEKGIGNIK 240
           +R  K+  W VQKN  ++  K ++ V  V+ +  KN  EK  GN++
Sbjct: 665 RRHLKRFHWMVQKNNNKRLSKINVEVRNVQENVPKNFQEKITGNVE 710


>SB_38478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/63 (25%), Positives = 33/63 (52%)
 Frame = +1

Query: 133 VQKNIRRKQRKRSIRVGPVRHSKVKNVNEKGIGNIKIASESAPLTFKKCLSTRIS*RMTR 312
           + K +RR Q+ R + +   RH K+ + ++  +G  ++   +   + KK  S+R   +M R
Sbjct: 22  LNKLLRRSQQVRKVDILVARHRKIDSESKSNVGFERVLERNK--SIKKAKSSR---KMAR 76

Query: 313 LTI 321
            T+
Sbjct: 77  NTL 79


>SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15)
          Length = 930

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 258 SALACDLYVSYAFFVHVLHLRVANGTYS 175
           S +A DL   YAF    LHLR  N  +S
Sbjct: 331 SRMAADLCAFYAFDSSALHLRPLNPAFS 358


>SB_4412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1095

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 240 LYVSYAFFVHVLHLRVANGTY-SYAS 166
           L   +A FVHV    +A GTY SYAS
Sbjct: 639 LVTIFAAFVHVYVYELARGTYKSYAS 664


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,789,875
Number of Sequences: 59808
Number of extensions: 103421
Number of successful extensions: 346
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)