Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2302
(321 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68217-6|CAE17833.1| 198|Caenorhabditis elegans Hypothetical pr... 27 3.0
AF040645-14|AAB94979.1| 779|Caenorhabditis elegans Hypothetical... 27 3.0
Z81107-8|CAB03231.3| 282|Caenorhabditis elegans Hypothetical pr... 27 4.0
Z81055-2|CAB02891.2| 437|Caenorhabditis elegans Hypothetical pr... 27 4.0
Z48367-3|CAE17722.1| 194|Caenorhabditis elegans Hypothetical pr... 27 4.0
DQ812088-1|ABG89384.1| 530|Caenorhabditis elegans mammalian str... 26 5.3
AC024823-3|AAP40515.1| 395|Caenorhabditis elegans Hypothetical ... 26 5.3
AC024823-2|AAF59596.3| 530|Caenorhabditis elegans Hypothetical ... 26 5.3
AC024823-1|AAL32257.1| 510|Caenorhabditis elegans Hypothetical ... 26 5.3
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 26 7.0
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 26 7.0
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 26 7.0
Z93380-2|CAB07596.1| 340|Caenorhabditis elegans Hypothetical pr... 25 9.2
Z83116-8|CAB05567.1| 397|Caenorhabditis elegans Hypothetical pr... 25 9.2
U23449-4|AAC24299.2| 534|Caenorhabditis elegans Hypothetical pr... 25 9.2
>Z68217-6|CAE17833.1| 198|Caenorhabditis elegans Hypothetical
protein F58G6.8 protein.
Length = 198
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 195 VANGTYSYASFSLLPSYVFLNPFLFLK*SFITKL 94
V + +S SF+L ++F NPFL L S K+
Sbjct: 4 VGHQIFSLLSFTLFSHFIFGNPFLILHFSVPVKM 37
>AF040645-14|AAB94979.1| 779|Caenorhabditis elegans Hypothetical
protein F52C6.14 protein.
Length = 779
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 90 VQNKNYKILKNRILDKCSVC 31
V++ N K+L R L++CS+C
Sbjct: 690 VESSNVKLLPKRRLERCSIC 709
>Z81107-8|CAB03231.3| 282|Caenorhabditis elegans Hypothetical
protein R07H5.9 protein.
Length = 282
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +1
Query: 100 CYKRLFKKQEWVQKNIRRKQRKRSIRVGPVRHSKVKNV---NEKGIGNIKIASESAPL 264
CY K + +K+ K+ ++S R V H K KNV +E G N+K+ P+
Sbjct: 159 CYDSEPTKSDTSKKS--SKKSRKSSRSSKVPHRKFKNVGSLDENGCVNVKVVVIERPI 214
>Z81055-2|CAB02891.2| 437|Caenorhabditis elegans Hypothetical
protein F01G10.2 protein.
Length = 437
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 115 FKKQEWVQKNIRRKQRKRSIRVGPVRHSKVKNVNEKGIGNIKIASESAP 261
F+K+ W QK RK K + P H K ++ + + K +S ++P
Sbjct: 289 FEKEVWRQKRYGRKTNKGYYKYDPNTHKKENDIEMEQLIR-KFSSAASP 336
>Z48367-3|CAE17722.1| 194|Caenorhabditis elegans Hypothetical
protein C33B4.5 protein.
Length = 194
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 151 RKQRKRSIRVGPVR-HSKVKNVNEKGIGNIKIASESAPLTF 270
++++ + R G +R +KVK+ + I N+K+ SE+ L F
Sbjct: 66 KRRKATTTRDGRIRIQTKVKHQQKATIENVKVISETVQLRF 106
>DQ812088-1|ABG89384.1| 530|Caenorhabditis elegans mammalian
stromal interaction molecule-1 protein.
Length = 530
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 127 EWVQKNIRRKQRKRSIRVGPVRHSKVKNV 213
E VQK + ++ KRSI G V H++++N+
Sbjct: 238 EDVQKMLNDERSKRSISDGVVNHTEMENL 266
>AC024823-3|AAP40515.1| 395|Caenorhabditis elegans Hypothetical
protein Y55B1BM.1c protein.
Length = 395
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 127 EWVQKNIRRKQRKRSIRVGPVRHSKVKNV 213
E VQK + ++ KRSI G V H++++N+
Sbjct: 238 EDVQKMLNDERSKRSISDGVVNHTEMENL 266
>AC024823-2|AAF59596.3| 530|Caenorhabditis elegans Hypothetical
protein Y55B1BM.1a protein.
Length = 530
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 127 EWVQKNIRRKQRKRSIRVGPVRHSKVKNV 213
E VQK + ++ KRSI G V H++++N+
Sbjct: 238 EDVQKMLNDERSKRSISDGVVNHTEMENL 266
>AC024823-1|AAL32257.1| 510|Caenorhabditis elegans Hypothetical
protein Y55B1BM.1b protein.
Length = 510
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 127 EWVQKNIRRKQRKRSIRVGPVRHSKVKNV 213
E VQK + ++ KRSI G V H++++N+
Sbjct: 238 EDVQKMLNDERSKRSISDGVVNHTEMENL 266
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -1
Query: 246 CDLYVSYAFFVHVLHLRVANGTYSYASFSLLPSYVFLNPF 127
CD Y Y FF ++ + + +G + S + L + +PF
Sbjct: 732 CDFYTPYVFFDYLGNYKAVDGADPFCSSTGLLNLASSDPF 771
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -1
Query: 246 CDLYVSYAFFVHVLHLRVANGTYSYASFSLLPSYVFLNPF 127
CD Y Y FF ++ + + +G + S + L + +PF
Sbjct: 732 CDFYTPYVFFDYLGNYKAVDGADPFCSSTGLLNLASSDPF 771
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -1
Query: 246 CDLYVSYAFFVHVLHLRVANGTYSYASFSLLPSYVFLNPF 127
CD Y Y FF ++ + + +G + S + L + +PF
Sbjct: 732 CDFYTPYVFFDYLGNYKAVDGADPFCSSTGLLNLASSDPF 771
>Z93380-2|CAB07596.1| 340|Caenorhabditis elegans Hypothetical
protein F28C12.2 protein.
Length = 340
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -1
Query: 216 VHVLHLRVANGTYSYASFSLLPSYVFLNPFLFLK*SFITKLWVQNKNYKI 67
+H+ + YA S LP + N L L F TKL +N+ +I
Sbjct: 269 IHITSKTTVSEEVFYAIVSFLPGVTYANLCLPLVIYFKTKLTTRNRKNRI 318
>Z83116-8|CAB05567.1| 397|Caenorhabditis elegans Hypothetical
protein M01B2.10 protein.
Length = 397
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 243 DLYVSYAF-FVHVLHLRVANGTYSYASFSLLPSYVFLNPFLFLK*SFITKLWVQNKN 76
D Y + A+ + ++ + + +Y Y + L+ F NPF+ L + I W+ N
Sbjct: 289 DFYCNKAYHYATIVICEIGSTSYKYCNEKLIKLDPFSNPFIKLVPTAIPGQWLYFNN 345
>U23449-4|AAC24299.2| 534|Caenorhabditis elegans Hypothetical
protein K06A1.5 protein.
Length = 534
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 100 CYKRLFKKQEWVQKNIRRKQRKRSIRVGPVRHSKVKNVNEK 222
C K +FK + + +++ R RS+ V H K NVN++
Sbjct: 25 CVKDMFKNYSLLDEQLQQSHRSRSVSVND-EHFK-GNVNDR 63
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,230,803
Number of Sequences: 27780
Number of extensions: 82174
Number of successful extensions: 293
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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