Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2302
         (321 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   2.8  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   2.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   8.4  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    20   8.4  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          20   8.4  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    20   8.4  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    20   8.4  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    20   8.4  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    20   8.4  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    20   8.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   8.4  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 99  KLWVQNKNYKILK 61
           K+W QNK  KI K
Sbjct: 65  KIWFQNKRAKIKK 77


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 99  KLWVQNKNYKILK 61
           K+W QNK  KI K
Sbjct: 65  KIWFQNKRAKIKK 77


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 60  FLIFYSFYFV 89
           FLI YS++F+
Sbjct: 230 FLIIYSYWFI 239


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 99 KLWVQNKNYKILK 61
          K+W QN+  K+ K
Sbjct: 53 KIWFQNRRMKLKK 65


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 124 QEWVQKNIRRKQ 159
           ++WV  NI+RK+
Sbjct: 33  EKWVVNNIKRKR 44


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 107 KDYLRNKNGFKKT*EGSKEK 166
           K Y +N+N ++K  E SKE+
Sbjct: 48  KSY-KNENSYRKYRETSKER 66


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 107 KDYLRNKNGFKKT*EGSKEK 166
           K Y +N+N ++K  E SKE+
Sbjct: 48  KSY-KNENSYRKYRETSKER 66


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 107 KDYLRNKNGFKKT*EGSKEK 166
           K Y +N+N ++K  E SKE+
Sbjct: 48  KSY-KNENSYRKYRETSKER 66


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 107 KDYLRNKNGFKKT*EGSKEK 166
           K Y +N+N ++K  E SKE+
Sbjct: 48  KSY-KNENSYRKYRETSKER 66


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 107 KDYLRNKNGFKKT*EGSKEK 166
           K Y +N+N ++K  E SKE+
Sbjct: 281 KSY-KNENSYRKYRETSKER 299


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 60  FLIFYSFYFV 89
           FLI YS++F+
Sbjct: 106 FLIIYSYWFI 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,978
Number of Sequences: 438
Number of extensions: 1126
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)