Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2301
         (541 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    24   0.98 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   3.0  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   3.0  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   5.2  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   5.2  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 314 LLSSWASNALVKSSKLAKMSPILKWGDQVVALPEYRA 424
           L++ WA++AL  S    ++SP+    ++VV L E RA
Sbjct: 147 LVAQWATDALNPSVYTYEVSPVFVLMEEVV-LREMRA 182


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 528 PHVVRGDGNSIQADIPFGKRGTRIGPGTDTKVRAQ 424
           P+VV  +  +   DI     GTR GP   T+ +A+
Sbjct: 313 PNVVLDEEGNPCPDIIIDVHGTRRGPKIKTQPKAE 347


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 432 RAQARYSGRATTWSPH 385
           R+Q RY+GRAT   P+
Sbjct: 280 RSQRRYTGRATCDCPN 295


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 354 LDFTSAFEAQDERSLRWRVDGALTNYQILEV*AAGFHAN 238
           + F+S    +  RSL     GALT + ++     G H N
Sbjct: 353 IKFSSFGMLKISRSLLTSFGGALTTFLVILFQYGGIHGN 391


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 163 TGFGGLKTVKIL 198
           TG GGL+ +K+L
Sbjct: 217 TGLGGLQNIKVL 228


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.137    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,002
Number of Sequences: 336
Number of extensions: 2984
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)