Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2301
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    56   3e-09
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    40   2e-04
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    38   0.001
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    32   0.047
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    30   0.19 
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    30   0.25 
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    27   2.3  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    26   3.1  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    26   4.1  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   5.4  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   7.2  

>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 56.0 bits (129), Expect = 3e-09
 Identities = 30/77 (38%), Positives = 49/77 (63%)
 Frame = +1

Query: 160 LTGFGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFEC 339
           ++GF  LK  +  + P+  +  GEVL+++KA  LN++DLI+ +G    P + P + G + 
Sbjct: 11  ISGFDQLKPEEY-EVPQK-LNPGEVLVKLKAASLNYRDLIITKGLYPLPLQLPVVPGSDG 68

Query: 340 AGEIEQVGENVTNFKVG 390
           AG IE+VGE+V  F+ G
Sbjct: 69  AGIIEKVGEDVEGFEKG 85


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +1

Query: 172 GGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEI 351
           G    ++++ K  P      ++I+    GLN+ D  +R G   +P   P+I G E AG +
Sbjct: 12  GPSSVLQVITKEIPKPAPNGLVIKNAYAGLNYIDTYLRTGLYTAP--LPYIPGKEAAGVV 69

Query: 352 EQVGENV-TNFKVG 390
             VG+ V  +FKVG
Sbjct: 70  AAVGDKVEADFKVG 83


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +1

Query: 229 EVLIRVKACGLNFQDLIV-RQGAI-DSPPKTPFILGFECAGEIEQVGENVTNFKVGRPSG 402
           +V + +KA G+   D+   ++G I D   K P ILG E AG + +VG+ V++ K G P  
Sbjct: 31  QVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHESAGVVVEVGKGVSSLKPGDPVA 90

Query: 403 GSP 411
             P
Sbjct: 91  VEP 93


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 32.3 bits (70), Expect = 0.047
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 229 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVG 390
           EV ++V    +   D     G +D     P +LG E AG +E +GE V N + G
Sbjct: 36  EVRVKVDWSAVCHTDAYTLSG-VDPEGAFPIVLGHEGAGIVESIGEGVINVRPG 88


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
 Frame = -3

Query: 434  FGPKRGTRGEPPLGRPTLKLVTFSPTCSISPAHSKPKMKGVFGGESMAP*RTIK----SW 267
            + P  G++  PP  +P  ++V   PT S   +  +P    V    +++P  T +    S 
Sbjct: 1000 YKPHGGSQIVPPPKQPANRVVPLPPTASQRASAYEPPTVSVPSPSALSPSVTPQLPPVSS 1059

Query: 266  KFRPQAFTRIRTSPSPTVGSGFLSILTVLRPPKPVSTTA 150
            +  P + TR +    P V +   S   V RP  P++T+A
Sbjct: 1060 RLPPVSATRPQIPQPPPVSTALPSSSAVSRP--PIATSA 1096


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +1

Query: 229  EVLIRVKACGL-NFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGR 393
            EV++RVK C + + QD++ +  A+D P  T  I   E   ++  + EN    K+G+
Sbjct: 1055 EVVLRVKMCQMGDVQDVLGK--ALDPPSSTNIIRALEKLHQVGALSENEKLTKLGK 1108


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = -3

Query: 380 KLVTFSPTCSISPAHSKPKMKGVFGGESMAP*RTIKSWKFRPQAFTRIRTSPSPTVGSGF 201
           K   FSP  S+S  H K K +      +      + SW   P    R  +  SP V S +
Sbjct: 491 KNTAFSPGTSLSTNHVKTKSRSAHNNSTSPFSTAVSSW-LNP---LRYPSDKSPRVISSY 546

Query: 200 LSILTVLRP 174
           L  + + +P
Sbjct: 547 LESVFISKP 555


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = -3

Query: 479 SASGVHELGRVQTPRFGPKRGTRGEPPLGRPTLKLVTFSPTCSISPAHSKP 327
           S+S V E G    P    +  T   PP  RP     T S T SIS A ++P
Sbjct: 187 SSSVVVESGEKDEPVVVTEEKTMVSPP-SRPDSTSTTKSKTSSISSARARP 236


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 357 SWRKCHQF*SGATKWWLSPSTALGPEPWCLYPAQFVY 467
           +WR+ H+F     + +L     +GP      P QF++
Sbjct: 134 AWRRTHKFPQPRFENFLKQQNIIGPYGTMFLPQQFIF 170


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 246 ESLRPKLPRFD-SSSGRHRLSTEDSFHL 326
           +S R  L  F  SS+ RH++STE  FH+
Sbjct: 216 QSFRGPLEPFKYSSTTRHKVSTESIFHV 243


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 394 PSGGSPRVPRLGPNLGVCTRPN 459
           P G S  V R GP + +CT P+
Sbjct: 212 PDGASTTVYRCGPLIDLCTGPH 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.137    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,951
Number of Sequences: 5004
Number of extensions: 45858
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)