Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2301
         (541 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)            90   9e-19
SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)                     52   2e-07
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   50   9e-07
SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)            36   0.028
SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.049
SB_50200| Best HMM Match : RVT_1 (HMM E-Value=0.044)                   31   0.60 
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)               30   1.4  
SB_43329| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)            29   3.2  
SB_51866| Best HMM Match : Pkinase (HMM E-Value=0)                     28   4.2  
SB_9859| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.2  
SB_19250| Best HMM Match : SOCS_box (HMM E-Value=1)                    28   5.6  
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.4  
SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
          Length = 562

 Score = 90.2 bits (214), Expect = 9e-19
 Identities = 39/82 (47%), Positives = 55/82 (67%)
 Frame = +1

Query: 145 MRAVVLTGFGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFI 324
           MR+VVLTG GG   +K+ K   P   +G+V+++V ACG+ F DL+ RQG     PK P++
Sbjct: 39  MRSVVLTGHGGNNKIKVEKYARPKPMQGQVVVKVHACGVTFADLLQRQGHFPLAPKPPYV 98

Query: 325 LGFECAGEIEQVGENVTNFKVG 390
            GFEC+G +E++GE VT   VG
Sbjct: 99  CGFECSGVVEELGEEVTGIDVG 120


>SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)
          Length = 316

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 30/73 (41%), Positives = 43/73 (58%)
 Frame = +1

Query: 145 MRAVVLTGFGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFI 324
           M+AV+ T  GG +++ I   P P + E EVLIRV    LN  D + R+G+   PP    I
Sbjct: 28  MKAVLFTP-GGPESMYIGDAPRPKLKETEVLIRVHFTALNRADTLQRKGSYPPPPGESEI 86

Query: 325 LGFECAGEIEQVG 363
           LG E +G +E++G
Sbjct: 87  LGLEVSGIVEELG 99


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 50.4 bits (115), Expect = 9e-07
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
 Frame = +1

Query: 166 GFGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKT---PFILGFE 336
           GF     VK+   PE  +    V+++  ACG+N+ D+ +R G  +S  K    P   GFE
Sbjct: 22  GFTEGANVKLRNIPERDL----VVVKTFACGVNYADICIRWGLYESAKKFVGWPITPGFE 77

Query: 337 CAGEIEQVGENVTNFKVGRPSGGS 408
            +G I+  GENVT F++G+   G+
Sbjct: 78  FSGVIQWKGENVTEFEIGQEVFGA 101


>SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +1

Query: 229 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVG 390
           +VLI++ A  ++  +  +R G+    P+ PF  G   AG I  +G+ VT  KVG
Sbjct: 289 QVLIKLSAASVSPVETYIRSGSYARLPELPFTPGNYGAGIIHAIGDEVTKHKVG 342


>SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)
          Length = 676

 Score = 35.5 bits (78), Expect = 0.028
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 220 GEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVT-NFKVGRP 396
           G  EVL++ +  G+N  D+    G      K PF  G E  GE+   G++    F VG+P
Sbjct: 37  GPEEVLVKTRYAGINATDINHTAGRYKPWNKPPFDAGLEGLGEVVATGKDYKGKFSVGQP 96


>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 34.7 bits (76), Expect = 0.049
 Identities = 21/52 (40%), Positives = 26/52 (50%)
 Frame = +1

Query: 229 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFK 384
           EV I++ A G+   D     G +D     P ILG E  G +E VGE VT  K
Sbjct: 30  EVRIKILATGVCHTDAYTLSG-VDPEGLFPCILGHEGGGIVESVGEGVTKVK 80


>SB_50200| Best HMM Match : RVT_1 (HMM E-Value=0.044)
          Length = 527

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +1

Query: 172 GGLKTVKILKKPE--PTVGEGEVLIRVKACGLN 264
           GGLK    LK+    P V EG V++++KACGL+
Sbjct: 301 GGLKGEYELKETFECPQVDEGSVVVKIKACGLD 333


>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
          Length = 1110

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 225  GRGPDSRESLRPKLPRFDSSSGRHRLSTED 314
            GRG D    +R +LP  DSS    R S ED
Sbjct: 1055 GRGRDKGRQMRTRLPSIDSSRSMGRSSDED 1084


>SB_43329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 311 FGGESMAP*RTIKSWKFRPQAFTRIRTSPSPT 216
           FG +  +P  TIKSW ++PQ  TR   +P  T
Sbjct: 74  FGIDGTSP-PTIKSWCYKPQTVTRSSKTPVKT 104


>SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 622

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 230 SPSPTVGSGFLSILTVLRPPKPVSTTARI 144
           +P PTV S     +T + PP PV+TT  +
Sbjct: 543 TPKPTVASRPSPAVTTVTPPSPVATTTAV 571


>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
          Length = 303

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 25/73 (34%), Positives = 31/73 (42%)
 Frame = +1

Query: 316 PFILGFECAGEIEQVGENVTNFKVGRPSGGSPRVPRLGPNLGVCTRPNSCTPLAERNVCL 495
           P +LG E +G I  VGE V++ K G      P  P    +     R N C   A+ N C 
Sbjct: 52  PMVLGHESSGVICAVGEGVSDLKEGDRVAIEPGTPCRTCSYCKKGRYNLC---AKMNFC- 107

Query: 496 DAVAITPNYVGGL 534
                TP Y G L
Sbjct: 108 ----ATPPYHGSL 116


>SB_51866| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 948

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 251 AFTRIRTSPSPTVGSGFLSILTVLRPPKPVSTT 153
           A TR+  + +PT+GS F     +L P   V+TT
Sbjct: 700 ATTRVTFNGTPTIGSSFTVASQLLTPDNTVATT 732


>SB_9859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
 Frame = +1

Query: 223 EGEVLIRVKACGLNFQDLIVRQG----------AIDSPPKTPFILGFECAGEIEQVGENV 372
           + EVL++V A  +N  D+ +R+G           +    + P I G + +G + + G  V
Sbjct: 28  DAEVLVKVHASSVNPIDVEMRRGYGTNLLNTWRKLVGVEEFPLICGRDFSGVVVKTGRRV 87

Query: 373 TNFKVGRPSGGSPRV 417
             F+ G    G+P V
Sbjct: 88  RRFRPGMEVWGTPSV 102


>SB_19250| Best HMM Match : SOCS_box (HMM E-Value=1)
          Length = 252

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 414 STALGPEPWCLYPAQFVYPACRKECL-PGCCCHHP 515
           ST L P+ +C YPA  +  +C+   L P   C +P
Sbjct: 53  STVLIPQVYCPYPASLLSLSCKSTVLIPQVYCPYP 87



 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 414 STALGPEPWCLYPAQFVYPACRKECL-PGCCCHHP 515
           ST L P+ +C YPA  +  +C+   L P   C +P
Sbjct: 163 STVLIPQVYCPYPASLLSLSCKSTVLIPQVYCPYP 197


>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2248

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/61 (24%), Positives = 21/61 (34%)
 Frame = -3

Query: 470  GVHELGRVQTPRFGPKRGTRGEPPLGRPTLKLVTFSPTCSISPAHSKPKMKGVFGGESMA 291
            G   +GR  TP    + G    P +G P +    + P   + PA   P      G     
Sbjct: 2114 GPPSMGRYNTPPPMGQYGAPARPAMGPPPMGSSRYGPPPPMGPARHSPSGPSPLGAPPSV 2173

Query: 290  P 288
            P
Sbjct: 2174 P 2174


>SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1603

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = -2

Query: 444 DTKVRAQARYSGRATTWSPHFKIGDIFANLLDFTSAFEA 328
           D  V      S R   WSP  KIGDI   L   +   EA
Sbjct: 516 DCHVMFNIALSARMAEWSPDEKIGDILYALFSKSMVLEA 554


>SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 530 PPT*FGVMATASRQTFLSASGVHELGRVQTPRFGPKRGTRG 408
           PPT    +   + + F+  S   EL   +TP+FG   G RG
Sbjct: 228 PPTASAAIEWFNGKDFMGQSIKVELAEARTPKFGAAGGGRG 268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.137    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,549,727
Number of Sequences: 59808
Number of extensions: 390014
Number of successful extensions: 994
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)