Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2301
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-3|CAB07384.1|  328|Caenorhabditis elegans Hypothetical pr...    59   2e-09
Z81570-2|CAB04604.1|  349|Caenorhabditis elegans Hypothetical pr...    49   2e-06
AF125951-1|AAD14690.3|  326|Caenorhabditis elegans Hypothetical ...    47   8e-06
Z70782-4|CAA94842.1|  347|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z70782-3|CAA94841.1|  347|Caenorhabditis elegans Hypothetical pr...    42   4e-04
Z82081-5|CAB04958.1|  344|Caenorhabditis elegans Hypothetical pr...    40   0.001
U18781-1|AAB03374.1|  384|Caenorhabditis elegans alcohol dehydro...    30   0.93 
AC006663-4|AAF39899.1|  384|Caenorhabditis elegans Hypothetical ...    30   0.93 
AC006663-3|AAL32231.1|  386|Caenorhabditis elegans Hypothetical ...    30   0.93 
U10401-9|AAA19054.4|  771|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U88172-11|AAB42257.1|  390|Caenorhabditis elegans Hypothetical p...    28   4.9  
U88172-10|AAM97988.1|  437|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF039048-4|AAK68333.1|  101|Caenorhabditis elegans Hypothetical ...    27   6.5  
AC024844-8|AAK29951.1|  421|Caenorhabditis elegans Hypothetical ...    27   6.5  
AL032635-4|CAA21601.1|  140|Caenorhabditis elegans Hypothetical ...    27   8.6  
AC024744-1|AAL00859.1|  685|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z92834-3|CAB07384.1|  328|Caenorhabditis elegans Hypothetical
           protein F39B2.3 protein.
          Length = 328

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 30/82 (36%), Positives = 46/82 (56%)
 Frame = +1

Query: 145 MRAVVLTGFGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFI 324
           MRA V+  FG    ++ ++   P + + +VL+R  A G+N  D  +R G     P  P++
Sbjct: 10  MRAAVVRRFGAPDVIEAVESDMPRLEKNQVLVRNYAAGVNPVDTYIRAGQYGKLPNLPYV 69

Query: 325 LGFECAGEIEQVGENVTNFKVG 390
            G + AG +E VGE+V N KVG
Sbjct: 70  PGKDGAGFVELVGESVKNVKVG 91


>Z81570-2|CAB04604.1|  349|Caenorhabditis elegans Hypothetical
           protein K12G11.3 protein.
          Length = 349

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 25/85 (29%), Positives = 48/85 (56%)
 Frame = +1

Query: 148 RAVVLTGFGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFIL 327
           RA+V   + G   +++ + P P+  + E+L++++  G+   DL V  G +      P + 
Sbjct: 10  RALVFDTWNG--PLEVRQVPVPSPADDEILVKIEYSGICHSDLHVWLGDLKDMSVCPLVG 67

Query: 328 GFECAGEIEQVGENVTNFKVGRPSG 402
           G E AG + Q+G+NVT +++G  +G
Sbjct: 68  GHEGAGSVVQIGKNVTGWQLGDKAG 92


>AF125951-1|AAD14690.3|  326|Caenorhabditis elegans Hypothetical
           protein D2063.1 protein.
          Length = 326

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 27/85 (31%), Positives = 43/85 (50%)
 Frame = +1

Query: 148 RAVVLTGFGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFIL 327
           RA++   +GG   +K L  P+P   E E+L++++  G+   D+    G      K P I 
Sbjct: 11  RALIFESYGGPLEIKQLPIPQP--NEDELLVKMEYSGICHSDVHTWLGDFHYVSKCPMIG 68

Query: 328 GFECAGEIEQVGENVTNFKVGRPSG 402
           G E AG +  VG  V N+++G   G
Sbjct: 69  GHEGAGSVISVGSKVKNWQIGDKVG 93


>Z70782-4|CAA94842.1|  347|Caenorhabditis elegans Hypothetical
           protein R04B5.6 protein.
          Length = 347

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
 Frame = +1

Query: 175 GLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDL-IVRQGAIDS-PPKTPFILGFECAGE 348
           G+  +++ + P    G  +VL+++   G+   D+  +  GAI S   K P +LG E +G 
Sbjct: 12  GINDLRLEQAPISKPGPRQVLVKINTVGICGSDVHFLTHGAIGSFVVKEPMVLGHESSGV 71

Query: 349 IEQVGENVTNFKVGRPSGGSPRVP 420
           + ++G  V  FKVG      P +P
Sbjct: 72  VSEIGSEVKGFKVGDRIAMEPGLP 95


>Z70782-3|CAA94841.1|  347|Caenorhabditis elegans Hypothetical
           protein R04B5.5 protein.
          Length = 347

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
 Frame = +1

Query: 175 GLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIV-RQGAIDS-PPKTPFILGFECAGE 348
           G+  +++ + P P  G  +VL++V   G+   D+     GAI     K P I+G E +G 
Sbjct: 12  GVDDLRLEQVPIPKPGPNQVLVKVHTVGICGSDVHYWTHGAIGPFVVKEPMIVGHETSGI 71

Query: 349 IEQVGENVTNFKVGRPSGGSPRVP 420
           + +VG  V + KVG      P +P
Sbjct: 72  VSEVGNEVKHLKVGDRIAMEPGLP 95


>Z82081-5|CAB04958.1|  344|Caenorhabditis elegans Hypothetical
           protein W09H1.5 protein.
          Length = 344

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 27/71 (38%), Positives = 36/71 (50%)
 Frame = +1

Query: 178 LKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQ 357
           LKTV I  KP       +VL++  A  +N  DL   QG     P  P + G E  G++  
Sbjct: 34  LKTVTIADKPSAD----QVLVQWIAAPINPADLNQIQGVYPVKPALPAVGGNEGFGKVIS 89

Query: 358 VGENVTNFKVG 390
           VG NV++ KVG
Sbjct: 90  VGSNVSSIKVG 100


>U18781-1|AAB03374.1|  384|Caenorhabditis elegans alcohol
           dehydrogenase protein.
          Length = 384

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 316 PFILGFECAGEIEQVGENVTNFKVG 390
           P +LG E +G +E VGE VT F  G
Sbjct: 65  PVVLGHEGSGIVESVGEGVTGFAPG 89


>AC006663-4|AAF39899.1|  384|Caenorhabditis elegans Hypothetical
           protein H24K24.3a protein.
          Length = 384

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 316 PFILGFECAGEIEQVGENVTNFKVG 390
           P +LG E +G +E VGE VT F  G
Sbjct: 65  PVVLGHEGSGIVESVGEGVTGFAPG 89


>AC006663-3|AAL32231.1|  386|Caenorhabditis elegans Hypothetical
           protein H24K24.3b protein.
          Length = 386

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 316 PFILGFECAGEIEQVGENVTNFKVG 390
           P +LG E +G +E VGE VT F  G
Sbjct: 67  PVVLGHEGSGIVESVGEGVTGFAPG 91


>U10401-9|AAA19054.4|  771|Caenorhabditis elegans Hypothetical
           protein T20B12.1 protein.
          Length = 771

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 387 HFKIGDIFANLLDFTSAFEAQDERSLR 307
           H  +GDI  NL  FT A E  D+R+ R
Sbjct: 426 HVYLGDITRNLEYFTKAIELSDDRNAR 452


>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 21  RRRDSSTGEDSDRKWCY*NTARGNARKIYRGEKG 122
           +RRD+  G++   +W + N A+   R +Y+G +G
Sbjct: 241 QRRDTGEGDELVARWYFDNQAKECRRFLYKGIRG 274


>U88172-11|AAB42257.1|  390|Caenorhabditis elegans Hypothetical
           protein ZK354.2a protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 236 RTSPSPTVGSGFLSILTVLRPPKPVS 159
           RT+P  T  +GF  +LTV+R PK V+
Sbjct: 262 RTTPETT--AGFFDLLTVIREPKDVA 285


>U88172-10|AAM97988.1|  437|Caenorhabditis elegans Hypothetical
           protein ZK354.2b protein.
          Length = 437

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 236 RTSPSPTVGSGFLSILTVLRPPKPVS 159
           RT+P  T  +GF  +LTV+R PK V+
Sbjct: 262 RTTPETT--AGFFDLLTVIREPKDVA 285


>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical
           protein Y49E10.10 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 391 RPSGGSPRVPRLGPNLGVCTRPNS 462
           +P GG P   + GPN G  T+PNS
Sbjct: 77  KPGGGGP-AGKPGPNAGDTTKPNS 99


>AF039048-4|AAK68333.1|  101|Caenorhabditis elegans Hypothetical
           protein F16B4.5b protein.
          Length = 101

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 464 HELGRVQTPRFGPKRGTRGEPPLGRPTLKLVTFSPTCSISPAHSKPKM-KGVFGG 303
           HE+GR +TP+F   + + G     R  L +VT  P     P + +P    G FGG
Sbjct: 12  HEIGRRETPQF---QSSSGNGIHSRAVLAIVTAKP----HPGYGRPSYGGGDFGG 59


>AC024844-8|AAK29951.1|  421|Caenorhabditis elegans Hypothetical
           protein Y65B4A.9 protein.
          Length = 421

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 236 RTSPSPTVGSGFLSILTVLRPPKPVS 159
           RT+P  T  +GF  +LT++R PK V+
Sbjct: 262 RTTPETT--AGFFDLLTIIREPKDVA 285


>AL032635-4|CAA21601.1|  140|Caenorhabditis elegans Hypothetical
           protein Y51A2A.6 protein.
          Length = 140

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 443 SVPGPIRVPRLPKGMSAWMLLPSPRTTW 526
           S P P R PR P   S WM    P+  W
Sbjct: 63  SRPRPTRPPRAPVCPSDWMTFDRPQGKW 90


>AC024744-1|AAL00859.1|  685|Caenorhabditis elegans Hypothetical
           protein Y108G3AL.3 protein.
          Length = 685

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = -2

Query: 504 NSIQADIPFGKRGTRIGPGTDTK-----VRAQARYSGRATTWSP 388
           N  Q D+P  + GT+  PGT +K     V A    S + T   P
Sbjct: 392 NGTQMDVPVDEEGTKKRPGTTSKKSIATVTASPEMSSKTTQMEP 435


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.137    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,550,479
Number of Sequences: 27780
Number of extensions: 282380
Number of successful extensions: 900
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)