Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2301
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    26   0.28 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    26   0.28 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.6  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    21   6.1  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    21   6.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.1  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 468 PACRKECLPGCCCHHPELR 524
           P C K C PGC C    LR
Sbjct: 61  PLCIKICAPGCVCRLGYLR 79


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 468 PACRKECLPGCCCHHPELR 524
           P C K C PGC C    LR
Sbjct: 61  PLCIKICAPGCVCRLGYLR 79


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 249 SLRPKLPRFDSSSGRHRLSTEDSFHLGL 332
           S+RPK P  D+ +G   LSTE    L L
Sbjct: 208 SVRPKFPSMDNING---LSTESKADLPL 232


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 154 RRAFPWAVGSHPFSPR 107
           RR FP   G  PF+P+
Sbjct: 31  RRPFPTFPGQGPFNPK 46


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 154 RRAFPWAVGSHPFSPR 107
           RR FP   G  PF+P+
Sbjct: 17  RRPFPTFPGQGPFNPK 32


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 499 HPGRHSFRQAGYTNWAGYRHQGSGP 425
           HP RH  RQ+   +   +R Q S P
Sbjct: 82  HPIRHGRRQSRSMDLNAHREQMSWP 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.137    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,384
Number of Sequences: 438
Number of extensions: 4038
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)