Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2300
         (463 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I5X9 Cluster: DNA-directed RNA polymerase; n=8; Plasm...    34   1.7  
UniRef50_Q83DA1 Cluster: Conserved domain protein; n=4; Coxiella...    32   5.3  
UniRef50_A0DJ74 Cluster: Chromosome undetermined scaffold_52, wh...    32   7.0  
UniRef50_A0CGY1 Cluster: Chromosome undetermined scaffold_18, wh...    31   9.2  

>UniRef50_Q8I5X9 Cluster: DNA-directed RNA polymerase; n=8;
           Plasmodium|Rep: DNA-directed RNA polymerase - Plasmodium
           falciparum (isolate 3D7)
          Length = 1450

 Score = 33.9 bits (74), Expect = 1.7
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 38  NNKYNVDCKQYYSTNKYLIFTKMSSYNF*DISHNRY-TLKRQLLETFVVLLLCSYETRVS 214
           NNK  +D K YY   +  +  ++ S  F D+    Y TLK+Q+ +T    +  +Y +++ 
Sbjct: 575 NNKNEIDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSKLR 634

Query: 215 NT 220
           +T
Sbjct: 635 ST 636


>UniRef50_Q83DA1 Cluster: Conserved domain protein; n=4; Coxiella
           burnetii|Rep: Conserved domain protein - Coxiella
           burnetii
          Length = 494

 Score = 32.3 bits (70), Expect = 5.3
 Identities = 15/60 (25%), Positives = 33/60 (55%)
 Frame = +2

Query: 20  HRQSLINNKYNVDCKQYYSTNKYLIFTKMSSYNF*DISHNRYTLKRQLLETFVVLLLCSY 199
           H +SL  ++  V CK  +  N ++IF  +  +NF  I+  ++ L   L+  ++++ L ++
Sbjct: 259 HYKSLTFSEIMVQCKHIFHINYWIIFLAIGMWNFNSINPLQHFLMFFLIGIYILVFLVTF 318


>UniRef50_A0DJ74 Cluster: Chromosome undetermined scaffold_52, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_52, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 1841

 Score = 31.9 bits (69), Expect = 7.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 47   YNVDCKQYYSTNKYLIFTKMSSY 115
            YN +CK++ S  KY  FT +SSY
Sbjct: 999  YNFECKEFSSQLKYTFFTSISSY 1021


>UniRef50_A0CGY1 Cluster: Chromosome undetermined scaffold_18, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_18,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 453

 Score = 31.5 bits (68), Expect = 9.2
 Identities = 23/88 (26%), Positives = 41/88 (46%)
 Frame = +2

Query: 65  QYYSTNKYLIFTKMSSYNF*DISHNRYTLKRQLLETFVVLLLCSYETRVSNTRLKSPFVS 244
           +Y + N+Y IF + +S+N      N+Y  ++Q+   F     C         ++KSP + 
Sbjct: 303 RYINNNEYSIFHRKTSFNI----INKYLQEKQVRNKF-----CLSPQNQQVPKIKSPTLK 353

Query: 245 XCKLHIVLCNYRNSHASSATKQYYKNKQ 328
              L+  L   RN+  +S   QY ++ Q
Sbjct: 354 ELNLYF-LSTKRNTENTSKQSQYTQHSQ 380


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 394,267,005
Number of Sequences: 1657284
Number of extensions: 6804239
Number of successful extensions: 14315
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14310
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24771286585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)