Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2300
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   7.4  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   7.4  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   7.4  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    25   7.4  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    24   9.8  

>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +2

Query: 62  KQYYSTNKYLIFTKMSSYN 118
           K++YSTN++  F++ + +N
Sbjct: 513 KRFYSTNRHKAFSRFADFN 531


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 293 THVNYGSYKVRCAICRXIRKETSNA 219
           THVNY + K+  AI   ++KE   A
Sbjct: 370 THVNYVANKIVDAIDEVVKKENKKA 394


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +2

Query: 62  KQYYSTNKYLIFTKMSSYN 118
           K++YSTN++  F++ + +N
Sbjct: 513 KRFYSTNRHKAFSRFADFN 531


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 35  INNKYNVDCKQYYSTN 82
           I N  N++CK+ YSTN
Sbjct: 356 IKNISNINCKEAYSTN 371


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = +2

Query: 101 KMSSYNF*DISHNRYTLKRQLLETFVVLL--LCSYETRVSNTRLKSPFVSXCKLHIVLCN 274
           K SS     I+ NR  ++ +  E  +VLL  + S   R +   L++P  S       L N
Sbjct: 442 KYSSTEISQITTNR-EVEEENEEILLVLLNIISSVIGRNAELDLENPISSLLPALEQLSN 500

Query: 275 YRNSHASSATKQYYK 319
           Y N   S   K  YK
Sbjct: 501 YSNREISDLAKDVYK 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,927
Number of Sequences: 5004
Number of extensions: 32187
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)